1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACTCGAATCGCTCCGGGCGTCGGAGCCAACTTGCTAGGCCAACACTCCGCCGAGAGGAACCAGGATGCCACTGCTTACGTCGGCAATCTCGATCCTCAGgttctctcgtttccttgtttcttttctccattgctttccgctttatctcttatttatttttattttaatttgttttagtgcttctgcaataaagctaggg...
species | Vitis vinifera |
transcript | Vv04s0023g01470.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGAGAGGAACCAGGATGCCACTGCTTACGTCGGCAATCTCGATCCTCAG GTAACCGAGGAGTTACTGTGGGAGTTGTTTGTTCAAGCGGGCCCTGTTGEST: gi|294965569|gb|GW837168.1|GW837168
genomic: CCGAGAGGAACCAGGATGCCACTGCTTACGTCGGCAATCTCGATCCTCAGgttctctcgt ... tttcttgcagGTAACCGAGGAGTTACTGTGGGAGTTGTTTGTTCAAGCGGGCCCTGTTG
EST: CCGAGAGGAACCAGGATGCCACTGCTTACGTCGGCAATCTCGATCCTCAG GTAACCGAGGAGTTACTGTGGGAGTTGTTTGTTCAAGCGGGCCCTGTTGEST: gi|161719366|gb|FC068974.1|FC068974
genomic: CCGAGAGGAACCAGGATGCCACTGCTTACGTCGGCAATCTCGATCCTCAGgttctctcgt ... tttcttgcagGTAACCGAGGAGTTACTGTGGGAGTTGTTTGTTCAAGCGGGCCCTGTTG
EST: CCGAGAGGAACCAGGATGCCACTGCTTACGTCGGCAATCTCGATCCTCAG GTAACCGAGGAGTTACTGTGGGAGTTGTTTGTTCAAGCGGGCCCTGTTGEST: gi|110387686|gb|EC952373.1|EC952373
genomic: CCGAGAGGAACCAGGATGCCACTGCTTACGTCGGCAATCTCGATCCTCAGgttctctcgt ... tttcttgcagGTAACCGAGGAGTTACTGTGGGAGTTGTTTGTTCAAGCGGGCCCTGTTG
EST: CCGAGAGGAACCAGGATGCCACTGCTTACGTCGGCAATCTCGATCCTCAG GTAACCGAGGAGTTACTGTGGGAGTTGTTTGTTCAAGCGGGCCCTGTTG
genomic: CCGAGAGGAACCAGGATGCCACTGCTTACGTCGGCAATCTCGATCCTCAGgttctctcgt ... tttcttgcagGTAACCGAGGAGTTACTGTGGGAGTTGTTTGTTCAAGCGGGCCCTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTCGAATCGCTCCGGGCGTCGGAGCCAACTTGCTAGGCCAACACTCCGCCGAGAGGAACCAGGATGCCACTGCTTACGTCGGCAATCTCGATCCTCAGgttctctcgtttccttgtttcttttctccattgctttccgctttatctcttatttatttttattttaatttgttttagtgcttctgcaataaagctaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaag