Sequence
atgc intronic sequence ATGC exonic sequenceTCTACAGCTTCCGGTGAGGCCAGCGTGTCTTCTACCGGCAATCAACCTGCGCCACCCAAGCCCGCACCCAAGAAAAAACGAAACCTCCCCGGAATGCCAGgtaaaatcgatagatcgtcaaaagtataccacggaggtttggcgaaatggtaaattgttgagcttcgtttggtgttcgaattttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g01430.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G06510.1 (Glycine max), 5'ss of exon 1
---TCTACAGCTTCCGGTGAGGC---CAGCGTGTCTTCTACCGGCAATCAACCTGCGCCACCCAAGCCCGCACCCAAGAAAAAACGAAACCTCCCCGGAATGCCAGgtaaaatcgatagatcgtcaaaagtataccacggaggtttggcgaaatggtaaattgttgagcttcgtttggtgttcgaattttgcag
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GCTTCCACCGCTTCAGGTGAAGCAGCCAGTGTCTCTTCCTCCGGCAATCAG---ACAAAACCCG---CCGCTCCAAAGAAAAAACGAAACCTCCCGGGCATGCCAGgtagttgtagtaaaa-gt--aaaacaaactaacaaacacgcaccaatt--tcaattaaatctcttctttattccttttttcttatcag
upper sequence: Vv04s0023g01430.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G25550.1 (Glycine max), 5'ss of exon 1
---TCTACAGCTTCCGGTGAGG---CCAGCGTGTCTTCTACCGGCAATCAACCTGCGCCACCCAAGCCCGCACCCAAGAAAAAACGAAACCTCCCCGGAATGCCAGgtaaaatcgatag-atcgtcaa----aagtataccacggaggtttggcgaaatggtaaattgt---tgagcttcgtttggt--gttcgaatt--ttgcag
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GCTTCCACAGCTTCAGGGGAAGCCGCCAGCGTCTCTTCCTCCGGCCACCAA---ACAAAACCCG---CCGTCCCAAAGAAAAAACGAAACCTCCCGGGCATGCCAGgtagctgtaacactaaccttaacttcaaactcaatctaacaatcaaacaaacacacatatcctctatcaactccattttactcgtcccagttaactttatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718371|gb|FC064777.1|FC064777EST: GCCACCCAAGCCCGCACCCAAGAAAAAACGAAACCTCCCCGGAATGCCAG ATCCGGACGCGGAGGTGATTGCTTTGTCTCCCAAGACTCTCATGGCGACAA
genomic: GCCACCCAAGCCCGCACCCAAGAAAAAACGAAACCTCCCCGGAATGCCAGgtaaaatcga ... aattttgcagATCCGGACGCGGAGGTGATTGCTTTGTCTCCCAAGACTCTAATGGCGACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTACAGCTTCCGGTGAGGCCAGCGTGTCTTCTACCGGCAATCAACCTGCGCCACCCAAGCCCGCACCCAAGAAAAAACGAAACCTCCCCGGAATGCCAGgtaaaatcgatagatcgtcaaaagtataccacggaggtttggcgaaatggtaaattgttgagcttcgtttggtgttcgaattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA