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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCTGTTTGAGTCTCCGCCAGATTGCACTGAGGTCACGGATTCGCCGCCCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAGgttcgattatcatatttttcggcttttcttttggaaaattttgatctaaattgtcgtaattctgtatacatttgatgaattttgttcatttaattgtcca...

Basic information

species Vitis vinifera
transcript Vv04s0023g00770.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30304071|gb|CB980865.1|CB980865
EST:     CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAG                         AGTCGACCCGGAAAGCTTGGATATGAAGCCAAACAAGGAAATGCATTGAGG
genomic: CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAGgttcgattat ... tccatttcagAGTCGACCCGGAAAGCTTGGATATGAAGCCAAACAAGGAAATGCATTGAGG
EST: gi|37185628|gb|CF604981.1|CF604981
EST:     CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAG                         AGTCGACCCGGAAAGCTTGGATATGAAGCCAAACAAGGAAATGCATTGAGG
genomic: CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAGgttcgattat ... tccatttcagAGTCGACCCGGAAAGCTTGGATATGAAGCCAAACAAGGAAATGCATTGAGG
EST: gi|110713106|gb|EE088737.1|EE088737
EST:     CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAG                         AGTCGACCCGGNAAGCTTGGATATGAAGCCAAACAAGGAAATGCATTGAGG
genomic: CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAGgttcgattat ... tccatttcagAGTCGACCCGGAAAGCTTGGATATGAAGCCAAACAAGGAAATGCATTGAGG
EST: gi|30132554|gb|CB917893.1|CB917893
EST:     CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAG                         AGTCGACCCGGAAAGCTTGGATATGAAGCCAAACAAGGAAATGCATTGAGG
genomic: CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAGgttcgattat ... tccatttcagAGTCGACCCGGAAAGCTTGGATATGAAGCCAAACAAGGAAATGCATTGAGG
EST: gi|110719658|gb|EE094978.1|EE094978
EST:     CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAAATCGGAGCTTTCTCAG                         AGTCGACCCGGAAAGCTTGGATATGAAGCCAAACA-GGAAATGCATTGAGG
genomic: CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAGgttcgattat ... tccatttcagAGTCGACCCGGAAAGCTTGGATATGAAGCCAAACAAGGAAATGCATTGAGG
EST: gi|110724184|gb|EE099791.1|EE099791
EST:     CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAA                         AGTCGACCCGGAAAGCTTGGATATGAAGCCAAACAAGGAAATGCCTTGAAG
genomic: CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAGgttcgattat ... tccatttcagAGTCGACCCGGAAAGCTTGGATATGAAGCCAAACAAGGAAATGCATTGAGG
EST: gi|110711222|gb|EE087493.1|EE087493
EST:     CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAG                         AGTCGACCCGGAAAGCTTGGATATGAAGCCNAACA-GGAAATGCATTGAGG
genomic: CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAGgttcgattat ... tccatttcagAGTCGACCCGGAAAGCTTGGATATGAAGCCAAACAAGGAAATGCATTGAGG
EST: gi|110713105|gb|EE088736.1|EE088736
EST:     CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAG                         AGTCGACCCGGAAAGCTTGGATATGAAGCCAA-CAAGGAGATGCATTGAGG
genomic: CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAGgttcgattat ... tccatttcagAGTCGACCCGGAAAGCTTGGATATGAAGCCAAACAAGGAAATGCATTGAGG
EST: gi|110712149|gb|EE089438.1|EE089438
EST:     CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAG                         AGTCGACCCGGAAAGCTTGGATATGAAACCAAACAAGGAAATGCATTG
genomic: CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAGgttcgattat ... tccatttcagAGTCGACCCGGAAAGCTTGGATATGAAGCCAAACAAGGAAATGCATTG
EST: gi|30304005|gb|CB980799.1|CB980799
EST:     CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAG                         AGTCGACCCGGAAAGCTTGGATATGAAGCCAAACAAGGAAATGCATTGAGG
genomic: CCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAGgttcgattat ... tccatttcagAGTCGACCCGGAAAGCTTGGATATGAAGCCAAACAAGGAAATGCATTGAGG
EST: gi|110718460|gb|EE095317.1|EE095317
EST:     CCAGCTCGTGTTCAGAGACGGCAGAATTGTGGAATTCGGA-CTTTCTCAG                         AGTCGACCCGGAAAGCTTGGATATGAAGCCAACCAAGGAA-TGCATTGAGG
genomic: CCAGCTCGTGTTCAGAGACGGCAGAATTGTG-AATTCGGAGCTTTCTCAGgttcgattat ... tccatttcagAGTCGACCCGGAAAGCTTGGATATGAAGCCAAACAAGGAAATGCATTGAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCTCTGTTTGAGTCTCCGCCAGATTGCACTGAGGTCACGGATTCGCCGCCCCAGCTCGTGTTCAGAGACGGCAGAATTGTGAATTCGGAGCTTTCTCAGgttcgattatcatatttttcggcttttcttttggaaaattttgatctaaattgtcgtaattctgtatacatttgatgaattttgttcatttaattgtcca

- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaaaa