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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGGTTCTTATTTGTACTTCAGGGCAAGTGGAAGGAGATTTGGTTTGGTTGCTGTTGTTTTTCTCCTTGCGTCCATCTTTTGCGTGGCCTTGTCTCAGgtactgtttcgattttgcgtctccgttttattgatcgtgattggtttgtggtttgctgttgaggttttttgtaaatctgtggatggaattgaacag

Basic information

species Vitis vinifera
transcript Vv04s0023g00380.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71859056|gb|DT008111.1|DT008111
EST:     TTGCTGTTGTTTTTCTCCTTGCGGCCATCTTTTGCGTGGCCTTGTCTCAG                         GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG
genomic: TTGCTGTTGTTTTTCTCCTTGCGTCCATCTTTTGCGTGGCCTTGTCTCAGgtactgtttc ... aattgaacagGGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG
EST: gi|71867156|gb|DT016211.1|DT016211
EST:     TTGCTGTTGTTTTTCTCCTTGCGGCCATCTTTTGCGTGGCCTTGTCTCAG                         GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG
genomic: TTGCTGTTGTTTTTCTCCTTGCGTCCATCTTTTGCGTGGCCTTGTCTCAGgtactgtttc ... aattgaacagGGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG
EST: gi|161715778|gb|FC066182.1|FC066182
EST:     TTGCTGTTGTTTTTCTCCTTGCGTCCATCTTTTGCGTGGCCTTGTCTCAG                         GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG
genomic: TTGCTGTTGTTTTTCTCCTTGCGTCCATCTTTTGCGTGGCCTTGTCTCAGgtactgtttc ... aattgaacagGGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG
EST: gi|294966027|gb|GW837394.1|GW837394
EST:     TTGCTGTTGTTTTTCTCCTTGCGTCCATCTTTTGCGTGGCCTTGTCTCAG                         GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG
genomic: TTGCTGTTGTTTTTCTCCTTGCGTCCATCTTTTGCGTGGCCTTGTCTCAGgtactgtttc ... aattgaacagGGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG
EST: gi|77584187|gb|DV221146.1|DV221146
EST:     TTGCTGTTGTTTTTCTCCTTGCGGCCATCTTTTGCGTGGCCTTGTCTCAG                         GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG
genomic: TTGCTGTTGTTTTTCTCCTTGCGTCCATCTTTTGCGTGGCCTTGTCTCAGgtactgtttc ... aattgaacagGGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG
EST: gi|110685575|gb|EE062425.1|EE062425
EST:     TTGCTGTTGTTTTTCTCCTTGCGTCCATCTTTTGCGTGGCCTTGTCTCAG                         GGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG
genomic: TTGCTGTTGTTTTTCTCCTTGCGTCCATCTTTTGCGTGGCCTTGTCTCAGgtactgtttc ... aattgaacagGGTGAGACGAATGGATCGGTTCTGGATCTGGGACGGCGTAGCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATGGGTTCTTATTTGTACTTCAGGGCAAGTGGAAGGAGATTTGGTTTGGTTGCTGTTGTTTTTCTCCTTGCGTCCATCTTTTGCGTGGCCTTGTCTCAGgtactgtttcgattttgcgtctccgttttattgatcgtgattggtttgtggtttgctgttgaggttttttgtaaatctgtggatggaattgaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT