1 5' 3' | 2 5' 3' |
TTTTACCCTCTGTTTGGTTCCTGAGAAAAATAGCCGCACAGAGGAAAGTTGCAACCCATTTGGATTTTCCCGAGAAAACAGCTTTTCGATTTTAATCGAGgtaagttgtttatttattgaagaaacccagttgaaaaaaaagcaaacgatatgaaatttgttttattttcttggaaagaattgtttctatcggtttgatg...
species | Vitis vinifera |
transcript | Vv04s0023g00310.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCAACCCATTTGGATTTTCCCGAGAAAACAGCTTTTCGATTTTAATCGAG TTTTCTCGGCAGCTAAACAGGGGCTGATTATGGCATCGGTGTTTCTGTATCEST: gi|161714617|gb|FC064214.1|FC064214
genomic: GCAACCCATTTGGATTTTCCCGAGAAAACAGCTTTTCGATTTTAATCGAGgtaagttgtt ... ttttcctcagTTTTCTCGGCAGCTAAACAGGGGCTGATTATGGCATCGGTGTTTCTGTATC
EST: GCAACCCATTTGGATTTTCCCGAGAAAACAGCTTTTCGATTTTAATCGAG TTTTCTCGGCAGCTAAACAGGGGCTGATTATGGCATCGGTGTTTCTGTATCEST: gi|161708238|gb|FC057449.1|FC057449
genomic: GCAACCCATTTGGATTTTCCCGAGAAAACAGCTTTTCGATTTTAATCGAGgtaagttgtt ... ttttcctcagTTTTCTCGGCAGCTAAACAGGGGCTGATTATGGCATCGGTGTTTCTGTATC
EST: GCAACCCATTTGGATTTTCCCGAGAAAACAGCTTTTCGATTTTAATCGAG TTTTCTCGGCAGCTAAACAGGGGCTGATTATGGCATCGGTGTTTCTGTATC
genomic: GCAACCCATTTGGATTTTCCCGAGAAAACAGCTTTTCGATTTTAATCGAGgtaagttgtt ... ttttcctcagTTTTCTCGGCAGCTAAACAGGGGCTGATTATGGCATCGGTGTTTCTGTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTACCCTCTGTTTGGTTCCTGAGAAAAATAGCCGCACAGAGGAAAGTTGCAACCCATTTGGATTTTCCCGAGAAAACAGCTTTTCGATTTTAATCGAGgtaagttgtttatttattgaagaaacccagttgaaaaaaaagcaaacgatatgaaatttgttttattttcttggaaagaattgtttctatcggtttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagaa