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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGAACAGCTGGAGAATCAATTAGAAGAACAGAGAGACTCACTCGCTGTTCTCAAAGAAGCCCTTGTTTCCGACCCTACAAACTCGGAGCTCCTCTCGgtacaactcttctctctcttcatcttccatctttcccgtttgctttctcaaaaaatcttgcaaaccctaaacagagggattggaaattttctacttattc...

Basic information

species Vitis vinifera
transcript Vv04s0008g07000.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37186604|gb|CF605957.1|CF605957
EST:     TTCTCAAAGAAGCCCTTGTTTCCGACCCTACAAACTCGGAGCTCCTCTCG                         GTTCATGAGGAGCTTATTTGGGCAATCAAAGATGCAGAAGAAGGGCTTTTT
genomic: TTCTCAAAGAAGCCCTTGTTTCCGACCCTACAAACTCGGAGCTCCTCTCGgtacaactct ... actggatcagGTTCATGAGGAGCTTATTTGGGCAATCAAAGATGCAGAAGAAGGGCTTTTT
EST: gi|26259436|gb|CA810499.1|CA810499
EST:     TTCTCAAAGAAGCCCTTGTTTCCGACCCTACAAACTCGGAGCTCCTCTCG                         GTTCATGAGGAGCTTATTTGGGCAATCAAAGATGCAGAAGAAGGGCTTTTT
genomic: TTCTCAAAGAAGCCCTTGTTTCCGACCCTACAAACTCGGAGCTCCTCTCGgtacaactct ... actggatcagGTTCATGAGGAGCTTATTTGGGCAATCAAAGATGCAGAAGAAGGGCTTTTT
EST: gi|110712504|gb|EE090201.1|EE090201
EST:     TTCTCAAAGAAGCCCTTGTTTCCGACCCTACAAACTCGGAGCTCCTGTCG                         GTTCATGAGGAGCTTGTTTGGGCAATCAAAGATGCAGAAGAAGGGCTTTTT
genomic: TTCTCAAAGAAGCCCTTGTTTCCGACCCTACAAACTCGGAGCTCCTCTCGgtacaactct ... actggatcagGTTCATGAGGAGCTTATTTGGGCAATCAAAGATGCAGAAGAAGGGCTTTTT
EST: gi|110718718|gb|EE095871.1|EE095871
EST:     TTCTCAAAGAGGCCCTTGTTTCCGACCCTACAAACTCGGAGCTCCTGTCG                         GTTCATGAGGAGCTTGTTTGGGCAATCAAAGATGCAGAAGAAGGGCTTTTT
genomic: TTCTCAAAGAAGCCCTTGTTTCCGACCCTACAAACTCGGAGCTCCTCTCGgtacaactct ... actggatcagGTTCATGAGGAGCTTATTTGGGCAATCAAAGATGCAGAAGAAGGGCTTTTT
EST: gi|37190291|gb|CF609640.1|CF609640
EST:     TTCTCAAAGAAGCCCTTGTTTCCGACCCTACAAACTCGGAGCTCCTCTCG                         GTTCATGAGGAGCTTATTTGGGCAATCAAAGATGCAGAAGAAGGGCTTTTT
genomic: TTCTCAAAGAAGCCCTTGTTTCCGACCCTACAAACTCGGAGCTCCTCTCGgtacaactct ... actggatcagGTTCATGAGGAGCTTATTTGGGCAATCAAAGATGCAGAAGAAGGGCTTTTT
EST: gi|110702309|gb|EE080873.1|EE080873
EST:     TTCTCAAAGAAGCCCTTGTTTCCGACCCTACAAACTCGGAGCTCCTGTCG                         GTTCATGAGGAGCTTGTTTGGGCAATCAAAGATGCAGAAGAAGGGCTTTTT
genomic: TTCTCAAAGAAGCCCTTGTTTCCGACCCTACAAACTCGGAGCTCCTCTCGgtacaactct ... actggatcagGTTCATGAGGAGCTTATTTGGGCAATCAAAGATGCAGAAGAAGGGCTTTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGGAACAGCTGGAGAATCAATTAGAAGAACAGAGAGACTCACTCGCTGTTCTCAAAGAAGCCCTTGTTTCCGACCCTACAAACTCGGAGCTCCTCTCGgtacaactcttctctctcttcatcttccatctttcccgtttgctttctcaaaaaatcttgcaaaccctaaacagagggattggaaattttctacttattc

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggaaa