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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTAATAACTCTAACATGGCCAGACCTCAGCAGCGATATCGAGGCGTCCGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaaacacatgaacatgtacatgtttcggtttcggtttcggtttcggtttcgttcacgtttcggtgttcacttccaagttgctaattgaaacgtttcgggtttgtgcag

Basic information

species Vitis vinifera
transcript Vv04s0008g06000.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110359315|gb|EC920607.1|EC920607
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|110408037|gb|EC973658.1|EC973658
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|110407774|gb|EC973389.1|EC973389
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|71858677|gb|DT007732.1|DT007732
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|110724613|gb|EE100592.1|EE100592
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|30132099|gb|CB917438.1|CB917438
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|110697784|gb|EE075175.1|EE075175
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|71854937|gb|DT003992.1|DT003992
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|110723979|gb|EE099404.1|EE099404
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|110357212|gb|EC920590.1|EC920590
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|71857304|gb|DT006359.1|DT006359
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|37183570|gb|CF602924.1|CF602924
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|110729314|gb|EE105456.1|EE105456
EST:     GACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTC
genomic: GACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTT-CTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTC
EST: gi|110356580|gb|EC919511.1|EC919511
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|110702817|gb|EE079121.1|EE079121
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|110359192|gb|EC920286.1|EC920286
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|110369079|gb|EC933224.1|EC933224
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|110722050|gb|EE097951.1|EE097951
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|110722609|gb|EE098987.1|EE098987
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|294966948|gb|GW839823.1|GW839823
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
EST: gi|22009718|gb|BQ794752.1|BQ794752
EST:     CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCT                         GAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG
genomic: CGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTgtaagttaaa ... gtttgtgcagGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCG