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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGGAAGGAGACCCATGAAAATAGCTGCGGCAGCGAATTCTGTTGAATCTTCGCCGACTGTGCCGGAAAAGCCTGAAATCGAGCTCGAATTCATAGGGgtacatttcagtttactctacaaagttctcagctcttttacaaatttttggttttggattattgaattttgatttttttttattaaatttaattttgatatag

Basic information

species Vitis vinifera
transcript Vv04s0008g04240.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351021976|gb|FQ437763.1|FQ437763
EST:     CTTCTCCGACTGTGCCGGATAAGCCTGAAATCGAGCTCGAATTCATAGGG                         GAGAAGCCAGGTAGCGATGGGTCATTCCCAGTGGAGAGGGCGAAGGCAGTG
genomic: CTTCGCCGACTGTGCCGGAAAAGCCTGAAATCGAGCTCGAATTCATAGGGgtacatttca ... tttgatatagGAGAAGCCAGGTAGCGATGGGTCATTCCCAGTGGAGAGGGCGAAGGCAGTG
EST: gi|110379568|gb|EC944773.1|EC944773
EST:     CTTCGCCGACTGTGCCGGAAAAGCCTGAAATCGAGCTCGAATTCATAGGG                         GAGAAGCCAGGTAGCGATGGGTCATTCCCAGTGGAGAGGGCGAAGGCAGTG
genomic: CTTCGCCGACTGTGCCGGAAAAGCCTGAAATCGAGCTCGAATTCATAGGGgtacatttca ... tttgatatagGAGAAGCCAGGTAGCGATGGGTCATTCCCAGTGGAGAGGGCGAAGGCAGTG