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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACATTTTCTCCTCCTAAAATTCTCGTCCGAAGCTAGGGTTTCTGCAACTCCACAAATGgtacgtctatatctgtctactttctctctcttcagaatcatatgtatgaagaatatgtattgtatgagattttgattttgattttgatgttgaattgaacag

Basic information

species Vitis vinifera
transcript Vv04s0008g03900.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110716567|gb|EE091662.1|EE091662
EST:     GTTTCTGCAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: GTTTCTGCAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|110705824|gb|EE083118.1|EE083118
EST:     AGGGTTTCTGCAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: AGGGTTTCTGCAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|34321111|gb|CF373865.1|CF373865
EST:     TCTTCCTAAAATTCTCGTCCGAAGCTAGGGTTTCTGCAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: TCCTCCTAAAATTCTCGTCCGAAGCTAGGGTTTCTGCAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|110393500|gb|EC958783.1|EC958783
EST:     CTGCAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: CTGCAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|110693836|gb|EE070416.1|EE070416
EST:     TTCTGCAACTCCACACATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: TTCTGCAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|110392473|gb|EC957921.1|EC957921
EST:     CAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: CAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|110707741|gb|EE084486.1|EE084486
EST:     AAGCTAGGGTTTCTGCAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: AAGCTAGGGTTTCTGCAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|71870115|gb|DT019170.1|DT019170
EST:     TCCTCCTAAAATTCTCGTCCGAAGCTAGGGTTTCTGCAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: TCCTCCTAAAATTCTCGTCCGAAGCTAGGGTTTCTGCAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|110388252|gb|EC952984.1|EC952984
EST:     TCCTCCTAAAATTCTCGTCCGAAGCTAGGGTTTCTGCAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: TCCTCCTAAAATTCTCGTCCGAAGCTAGGGTTTCTGCAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|110409567|gb|EC975233.1|EC975233
EST:     CCGAAGCTAGGGTTTCTGCAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: CCGAAGCTAGGGTTTCTGCAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|30301004|gb|CB977798.1|CB977798
EST:     TCCTCCTAGAATTCTCGTCCGAAGCTAGGGTTTCTGCAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: TCCTCCTAAAATTCTCGTCCGAAGCTAGGGTTTCTGCAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|110717458|gb|EE093330.1|EE093330
EST:     GTTTCTGCAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: GTTTCTGCAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|71869027|gb|DT018082.1|DT018082
EST:     TCCTCCT-AAATTCTCGTCCGAAGCTAGGGTTTCTGCAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: TCCTCCTAAAATTCTCGTCCGAAGCTAGGGTTTCTGCAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|71868495|gb|DT017550.1|DT017550
EST:     TCCTCCTAAAATTCTCGTCCGAAGCTAGGGTTTCTGCAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: TCCTCCTAAAATTCTCGTCCGAAGCTAGGGTTTCTGCAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|110424590|gb|EC990957.1|EC990957
EST:     CAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: CAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|110707148|gb|EE083294.1|EE083294
EST:     GTTTCTGCAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: GTTTCTGCAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|110695260|gb|EE073077.1|EE073077
EST:     CTAGGGTTTCTGCAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: CTAGGGTTTCTGCAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
EST: gi|110386000|gb|EC950569.1|EC950569
EST:     TGCAACTCCACAAATG                         GGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC
genomic: TGCAACTCCACAAATGgtacgtctat ... aattgaacagGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTC