1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCCTAACCACACGATCTCTGCTTCTGCAACCTCGGGCTCCGATTTCGGTGGCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctctcactcaagctcaaaatttgcttgtttctctgtttggttgctgagaaagttctgatgagaaggaaaatgagtttttaaatgttaccttat...
species | Vitis vinifera |
transcript | Vv04s0008g03770.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGATCCCATTCTAGGG GTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGCEST: gi|161714368|gb|FC063209.1|FC063209
genomic: AGATCCCATTCTAGGGgtactttctc ... aaacaaacagGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
EST: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGG GTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGCEST: gi|349822896|gb|FQ398283.1|FQ398283
genomic: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctc ... aaacaaacagGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
EST: GCTCTGTTTTTGCTCACGCCGTTCAGGCTCCTGAAGATCCCATTCTAGGG GTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGCEST: gi|71860471|gb|DT009526.1|DT009526
genomic: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctc ... aaacaaacagGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
EST: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGG GTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGCEST: gi|349825792|gb|FQ423087.1|FQ423087
genomic: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctc ... aaacaaacagGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
EST: GCTCTGTTTTTGCTCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGG GTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGCEST: gi|161710282|gb|FC060659.1|FC060659
genomic: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctc ... aaacaaacagGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
EST: GCTCTGTTTTTGCTCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGG GTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGCEST: gi|161718975|gb|FC067020.1|FC067020
genomic: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctc ... aaacaaacagGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
EST: GCTCTGTTTTTGCTCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGG GTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGCEST: gi|161706860|gb|FC055539.1|FC055539
genomic: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctc ... aaacaaacagGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
EST: GCTCTGTTTTTGCTCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGG GTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGCEST: gi|351029008|gb|FQ435009.1|FQ435009
genomic: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctc ... aaacaaacagGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
EST: GCTCTGTTTTTGCTCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGG GTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGCEST: gi|110698493|gb|EE076055.1|EE076055
genomic: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctc ... aaacaaacagGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
EST: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGG GTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGCEST: gi|110368860|gb|EC932986.1|EC932986
genomic: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctc ... aaacaaacagGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
EST: TTTTGATCACGTCGTTCAGGCTCCTGACCTTCCCATTCTAGGG GTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGCEST: gi|110711178|gb|EE087421.1|EE087421
genomic: TTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctc ... aaacaaacagGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
EST: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGG GTGACTGTGGCCTACAGCAAAGATCCTAGCCCAGTGAAACTGAACTTGGGCEST: gi|71858293|gb|DT007348.1|DT007348
genomic: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctc ... aaacaaacagGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
EST: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGG GTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGCEST: gi|349830105|gb|FQ420365.1|FQ420365
genomic: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctc ... aaacaaacagGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
EST: GCTCTGTTTTTGCTCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGG GTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGCEST: gi|29783169|gb|CB349167.2|CB349167
genomic: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctc ... aaacaaacagGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
EST: GCTCTGTTTTTGCTCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGG GTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGCEST: gi|30306042|gb|CB982836.1|CB982836
genomic: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctc ... aaacaaacagGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
EST: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGG GTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
genomic: GCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctc ... aaacaaacagGTGACTGTGGCCTACAACAAAGATCCTAGCCCAGTGAAACTGAACTTGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTAACCACACGATCTCTGCTTCTGCAACCTCGGGCTCCGATTTCGGTGGCTCTGTTTTTGATCACGTCGTTCAGGCTCCTGAAGATCCCATTCTAGGGgtactttctctcactcaagctcaaaatttgcttgtttctctgtttggttgctgagaaagttctgatgagaaggaaaatgagtttttaaatgttaccttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaaa