1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGGTGAATTCTATGGTTGAACGAGCCACGAGCGACATGTTGATCGGTCCAGATTGGGCGATGAACATCGAGATCTGTGATATGCTTAATCACGACCCTGGgtatatatttatctgcgccttttttcaaacacttttaagtatcgtggttttcttttttccttcttaggattctgtgatagtctgctgtgtggatttgatg...
species | Vitis vinifera |
transcript | Vv04s0008g03720.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATTGGGCGATGAACATCGAGATCTGTGATATGCTTAATCACGACCCTGG GCAAGCAAAGGATGTGGTCAAAGGCATAAAAAAGCGCATTGGAAGTAAGAAEST: gi|161707455|gb|FC055985.1|FC055985
genomic: GATTGGGCGATGAACATCGAGATCTGTGATATGCTTAATCACGACCCTGGgtatatattt ... gatttatcagGCAAGCAAAGGATGTGGTCAAAGGCATAAAAAAGCGCATTGGAAGTAAGAA
EST: GATGGGGCGATGAACATCGAGATCTGTGATATGCTTAATCACGACCCTGG GCAAGCAAAGGATGTGGTCAAAGGCATAAAAAAGCGCATTGGAAGTAAGAAEST: gi|18459792|gb|BM438070.1|BM438070
genomic: GATTGGGCGATGAACATCGAGATCTGTGATATGCTTAATCACGACCCTGGgtatatattt ... gatttatcagGCAAGCAAAGGATGTGGTCAAAGGCATAAAAAAGCGCATTGGAAGTAAGAA
EST: TGAACATCGAGATCTGTGATATGCTTAATCACGACCCTGG GCAAGCAAAGGATGTGGTCAAAGGCATAAAAAAGCGCATTGGAAGTAAGAA
genomic: TGAACATCGAGATCTGTGATATGCTTAATCACGACCCTGGgtatatattt ... gatttatcagGCAAGCAAAGGATGTGGTCAAAGGCATAAAAAAGCGCATTGGAAGTAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGAATTCTATGGTTGAACGAGCCACGAGCGACATGTTGATCGGTCCAGATTGGGCGATGAACATCGAGATCTGTGATATGCTTAATCACGACCCTGGgtatatatttatctgcgccttttttcaaacacttttaagtatcgtggttttcttttttccttcttaggattctgtgatagtctgctgtgtggatttgatg
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