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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACCTCTTCCATTTCCTAGCTTTCTTCTCATACTTCGTCGTTCGTAGCTCTGCATCCCAAGTTCTCTCTCCGCACATTCTCCATCGCCTTTTTCATCGCgtaagcactctctctactcgcaaatcgccattttattcgtttctccgatattcttttggcaattaatggtttttagtattctatttgatttttttttttgaatttttgtag

Basic information

species Vitis vinifera
transcript Vv04s0008g03260.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g03260.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G26900.1 (Glycine max), 5'ss of exon 1
CTACCTCTTCCATTTCCTAGCTTTCTTCTCATACTTCGTCGTTCGTAGCTCTGCATCCCAAGTTCTCTCTCCGCACATTCTCCATCGCCTTTTTCATCGCgtaag-cactctctctactcgcaaatcgccattttattcgtttctccgatattcttttggcaattaatggtttttagtat-----tctatttgatttttttttttgaatttttgtag------------------------------------
|||||||||||||||| || | |||||||| || ||||||||||| ||||| ||| ||||| |  |  | || ||  |    || |  ||  ||| ||||||||  | ||||||||         || |  | |   ||  |      ||||   | |    ||  ||   | |   |||     | ||| |   | | | | |  |  ||||| ||                                    
CTACCTCTTCCATTTCTTAACCTTCTTCTCCTATTTCGTCGTTCGCAGCTCCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcttttgcagattgcttactttacttacttgttccctctttcgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349823503|gb|FQ414913.1|FQ414913
EST:     CCGCACATTCTCCATCGCCTTTTTCATCGC                         GAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAG
genomic: CCGCACATTCTCCATCGCCTTTTTCATCGCgtaagcactc ... atttttgtagGAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAG
EST: gi|351013864|gb|FQ434016.1|FQ434016
EST:     CTGCATCCCAAGTTCTCTCTCCGCACATTCTCCATCGCCTTTTTCATCGC                         GAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAG
genomic: CTGCATCCCAAGTTCTCTCTCCGCACATTCTCCATCGCCTTTTTCATCGCgtaagcactc ... atttttgtagGAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAG
EST: gi|351031315|gb|FQ445340.1|FQ445340
EST:     CTGCATCCCAAGTTCTCTCTCCGCACATTCTCCATCGCCTTTTTCATCGC                         GAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAG
genomic: CTGCATCCCAAGTTCTCTCTCCGCACATTCTCCATCGCCTTTTTCATCGCgtaagcactc ... atttttgtagGAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAG
EST: gi|351045014|gb|FQ449268.1|FQ449268
EST:     CTGCATCCCAAGTTCTCTCTCCGCACATTCTCCATCGCCTTTTTCATCGC                         GAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAG
genomic: CTGCATCCCAAGTTCTCTCTCCGCACATTCTCCATCGCCTTTTTCATCGCgtaagcactc ... atttttgtagGAGATTCAAGCGATTTTGGCGTTCTCTGTGTTGGCTGTCATCAAG