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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTTCATAGACGAAAAGCTTAGGCCAAAGTTGAAGGCTCAGCCTGTAGCTGTGAAATTACTTGACTTGGATGGCCTTCAAGGCCATAGAGAATGGCTGgtttgtttctgaactgacgaattattccccatagttcttatattctgtgtatagatactgtgtcttttggtcaattcttccacctcttggatcgataaaatcgggttttttgtag

Basic information

species Vitis vinifera
transcript Vv04s0008g02070.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g02070.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G05980.1 (Glycine max), 5'ss of exon 1
GGGGTTCATAGACGAAAAGCTTAGGCCAAAGTTGAAGGCTCAGCCTGTAGCTGTGAAATTACTTGACTTGGATGGCCTTCAAGGCCATAGAGAATGGCTGgtttgtttctgaactgacgaattattccccatagttcttatatt----------ctgtgtatagatactgtgtcttttggtcaattcttccacct----cttggatcgataaaatcgggttttttgtag--------------------
||| ||| | || || || ||||| |     ||||||||||||||||| |||||||||  ||| |||||||||||| | ||||| || || || ||||||||| || | |    |      ||   || |||  ||||  ||||          |  | || |  || | |  || |   | || |||      |    |  || || |||| ||| | |  |   | |                    
GGGTTTCGTTGATGACAAACTTAGACTTGGTTTGAAGGCTCAGCCTGTGGCTGTGAAACAACTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGgttagtgtttttttttttttttt-cacctcatcattctagtattagtcacaaatcaatttaaaagtattattcctatgaataaaatctagttattgaaacaaggttcaataatatctgatactagcttggcacatattttcttttatag

upper sequence: Vv04s0008g02070.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G05990.1 (Glycine max), 5'ss of exon 1
GGGGTTCATAGACGAAAAGCTTAGGCCAAAGTTGAAGGCTCAGCCTGTAGCTGTGAAATTACTTGACTTGGATGGCCTTCAAGGCCATAGAGAATGGCTGgtttgtttctgaactgacgaatt-attccccatagttcttatatt----------ctgtgtatagatactgtgtcttttggtcaattcttccacct----cttggatcgataaaatcgggttttttgtag------------------------
||| ||  | || || || ||||| ||    ||||||||||||||| | |||||||||  ||| |||||||||||| | ||||| || || || ||||||||| |||| ||   |      ||  || | | |  ||||  ||||          |  | || |  || |     | | | | || ||   |   |    |  || || | || ||| | |  ||  | |                        
GGGTTTTGTTGATGATAAACTTAGACCTGGTTTGAAGGCTCAGCCTCTGGCTGTGAAACAACTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGgttagtttgtgtttttttttttttgtttcacttcattctagtattagtgacaaatcaatttacaagtattactcttatggataaaatccagctaatgaaacaaggttcaagaatatctgatacttgtttgcctggcacatattttcttttatag

upper sequence: Vv04s0008g02070.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT2G26290.1 (Arabidopsis thaliana), 5'ss of exon 1
GGGGTTCATAGACGAAAAGCTTAGGCCAAAGTTGAAGGCTCAGCCTGTAGCTGTGAAATTACTTGACTTGGATGGCCTTCAAGGCCATAGAGAATGGCTGgtttgtttctgaactgacgaattattccccatagttcttatattctgtgtatagatactgtgtcttt-tggtcaattcttccacctcttggatcgataaaatcgggttttttgtag
 ||||| || || || ||| |||  ||     |  | || || || || ||||| ||    |||||  |  |||||| ||||||||||||||||||||||||    ||             ||  ||   ||   | || |  |||   |  |     | | | ||       ||   ||  |   |   || ||      |||  | |||| || 
AGGGTTTATTGATGATAAGGTTAAACCGGGTATCGAAGCCCAACCGGTTGCTGTAAAGGCTCTTGATCTTCATGGCCATCAAGGCCATAGAGAATGGCTGgtaacatttc-----------tttctctttatgtatgtttttgtctacattcaagacttttctattcacaaggaacaatttaattacgaagaccgtc----tcgattattttata-