Sequence
atgc intronic sequence ATGC exonic sequenceCCTTATTTTCCTCGAGGCACAGAGATCAGGGAAGCTTCCTGCCAATAATAGGCTACCTTGGAGAGGAGACTCGGCCCTTGAGGATGGAAAACTCGTAAATgtgagattattttctgtcaaaagtactattttttttccgggttttcaccaatttattgatctgaatgattggttttcgcatttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g02020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G05930.1 (Glycine max), 5'ss of exon 1
CCTTATTTTCCTCGAGGCACAGAGATCAGGGAAGCTTCCTGCCAATAATAGGCTACCTTGGAGAGGAGACTCGGCCCTTGAGGATGGAAAACTCGTAAATgtg-agattattttctgtcaaaagtactattttttttccgggttttca--ccaatttattgatctgaatgattgg-----ttttcgcatttag---------------------
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CCTTATCTTCCTAGAGGCACAACGTTCAGGGAAGCTCCCTTCAAATAATAGGGTGCCTTGGAGAGGAGACTCAGCACTCGATGATGGCAAACTCGTTAATgtacatatctttctatctcttaaaaacacatatatacacaaattaacatgcaaagagaatgata-gaataatttgtgatatcttatcatataattaatattaatttatatatag
upper sequence: Vv04s0008g02020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G05950.1 (Glycine max), 5'ss of exon 1
CCTTATTTTCCTCGAGGCACAGAGATCAGGGAAGCTTCCTGCCAATAATAGGCTACCTTGGAGAGGAGACTCGGCCCTTGAGGATGGAAAACTCGTAAATgtgagattattt---tctgtcaaaagtac-tattttttttccgggttttcaccaatttattgatctgaatgattg-gttttcgcatttag---------------------
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CCTTATCTTCCTAGAGGCACAACGTTCAGGGAAGCTCCCTTCAAATAATAGGGTGCCTTGGAGAGGAGACTCAGCACTCGATGATGGCAAACTCGCTAATgtacatatctttctatctcttaaaaacacatataaacaaattaacatgcaaagagaatgatagaataatttgtgatatcttatcatataattaatattaatttatatatag
upper sequence: Vv04s0008g02020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G43860.1 (Arabidopsis thaliana), 5'ss of exon 1
CCTTATTTTCCTCGAGGCACAGAGATCAGGGAAGCTTCCTGCCAATAATAGGCTACCTTGGAGAGGAGACTCGGCCCTTGAGGATGGAAAACTCGTAAATgtgagattattttctgtcaaaagtactattttttttc---cgggttttcaccaatttattgatctgaatgattggttttcgcatttag--
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CCTCATCTTCTTGGAGGCTCAAAGATCAGGCAAACTCCCTCCTAATAATAGGGTTCCATGGAGAGGTGACTCTGCTCTCGACGATGGCAAACTCGTAAATgtaagtttaggttatattacaaataatgtttattcataaatcagatttta--aggttacaaaagataatgagataattatgtatgtatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689427|gb|EC939263.1|EC939263EST: GGCTACCTTGGAGAGGAGACTCGGCTCTTGAGGATGGAAAACTCGTAAAT GCGGATCTTGTTGGAGGATATTATGATGCAGGAGACAATGTGAAGTATGGG
genomic: GGCTACCTTGGAGAGGAGACTCGGCCCTTGAGGATGGAAAACTCGTAAATgtgagattat ... tcgcatttagGCGGATCTTGTTGGAGGATATTATGATGCAGGAGACAATGTGAAGTATGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTTATTTTCCTCGAGGCACAGAGATCAGGGAAGCTTCCTGCCAATAATAGGCTACCTTGGAGAGGAGACTCGGCCCTTGAGGATGGAAAACTCGTAAATgtgagattattttctgtcaaaagtactattttttttccgggttttcaccaatttattgatctgaatgattggttttcgcatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA