1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGTTACCACGCAGAGCTAGGGTTTGGTGAGTAACACTCCCAAAGCGCCGAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaactatttccatccatttggttcccgagaaaactaggaacagaaaaacgaagaaaattttagagtactctctcatttacttatattacaactga...
species | Vitis vinifera |
transcript | Vv04s0008g01750.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|30295730|gb|CB972524.1|CB972524
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|32247633|gb|CD713452.1|CD713452
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|32270022|gb|CD719181.1|CD719181
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|33401617|gb|CF207244.1|CF207244
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: TCAGTTTCTGC-AACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|110728527|gb|EE104173.1|EE104173
genomic: TCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|352773252|gb|FQ470839.1|FQ470839
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|110732469|gb|EE107785.1|EE107785
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|32269891|gb|CD719050.1|CD719050
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|110688348|gb|EE066796.1|EE066796
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|77578758|gb|DV218182.1|DV218182
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|27582088|gb|CB004783.1|CB004783
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|110709636|gb|EE085271.1|EE085271
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: CTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|32272105|gb|CD721264.1|CD721264
genomic: CTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|30253062|gb|CB970613.1|CB970613
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: GAAGCTCAGTTTCTGCAATCATGGCGACGCAGATGAGCAAGAGGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|161705478|gb|FC055320.1|FC055320
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|352782408|gb|FQ470311.1|FQ470311
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|30326710|gb|CD009972.1|CD009972
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGAEST: gi|161706215|gb|FC054973.1|FC054973
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
EST: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAG TTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
genomic: GAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaact ... ttttcaacagTTTGTGGCTGATGGAGTCTTCTTCGCGGAGCTGAATGAGGTGTTGACCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTTACCACGCAGAGCTAGGGTTTGGTGAGTAACACTCCCAAAGCGCCGAAGCTCAGTTTCTGCAAACATGGCGACGCAGATGAGCAAGAAGCGAAAGgtcagtaactatttccatccatttggttcccgagaaaactaggaacagaaaaacgaagaaaattttagagtactctctcatttacttatattacaactga
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc