Sequence
atgc intronic sequence ATGC exonic sequenceCTTCATTGTTTGGGATTCGCACAAGTTCTCTACTACTCTTCTTCCCAGGTACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGCCAGCTCAACACATATgtaagtgctctgaatttgggcttctttcttcttaattttctgtgatcttacctgggttgcttcggttttgctctgggaattggtttttgtattctgggtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g01110.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA14G11030.1 (Glycine max), 5'ss of exon 1
CTTCATTGTTTGGGATTCGCACAAGTTCTCTACTACTCTTCTTCCCAGGTACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGCCAGCTCAACACATATgtaagtgctctgaatttgggcttctttcttcttaattttctgtgatcttacctgggttgcttcggttttgctctgggaattggtttttgtattctgggtt-----
||| | || |||||||| |||||||| ||| || |||| || | |||||||||||| | || ||||||||||||||||||||||||||| | ||||||||| || || |||| ||| || | || | || | | || ||| | |||| | | |||||| ||| || |
CTTTGTGGTGTGGGATTCTCACAAGTTTTCTGCTGACATTCTGCCTCGTTACTTCAAGCACGGCAATTTCTCCAGCTTCATTCGCCAGCTCAACGCCTATgtaagtact--gactttgttctttgaaattttagtttgtgaccaattacatgcatggtgtttca--tgtgct-taagggttggttgatgttgtccctttatttat
upper sequence: Vv04s0008g01110.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G34540.1 (Glycine max), 5'ss of exon 1
CTTCATTGTTTGGGATTCGCACAAGTTCTCTACTACTCTTCTTCCCAGGTACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGCCAGCTCAACACATATgtaagtgctctgaatttgggcttctttcttcttaattttctgtgatcttacctgggttgcttcggttttgctctgggaattggtttttgtattctgggtt--
||| | || ||||| || |||||||| ||| || |||| || | |||||||||||| || ||||||||||||||||||||||||||||| ||||||||| ||| | || ||| || || | | | || | | || | | || ||| || | | || || || ||
CTTTGTCGTGTGGGACTCTCACAAGTTTTCTGCTCACATTCTGCCTCGTTACTTCAAGCACGCCAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATgtaagtactcactgtgtgctctttgaaattttttgtatgtaactgttcatgatgcatggttttgtgtctgagttggtgtttaatgt--gttttaaggattgg
upper sequence: Vv04s0008g01110.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
CTTCATTGTTTGGGATTCGCACAAGTTCTCTACTACTCTTCTTCCCAGGTACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGCCAGCTCAACACATATgtaagtgctctgaa---tttgggcttc----tttcttcttaattttctgtgatcttacctgggttgcttcggttttgctctgggaattggtttttgtattctgggtt
||||||||| ||| | | | |||| | | || |||| |||||||||||| || ||||||||||| | |||||||||||||| ||||||||| | | | | || || | || || | || || | | | || | | | ||| | |
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30326040|gb|CD009302.1|CD009302EST: ACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGCCAGCTCAACACATAT GGTTTTAGAAAAGTCGATCCAGATCGATGGGAGTTTGCAAATGAAGGGTTT
genomic: ACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGCCAGCTCAACACATATgtaagtgctc ... atggatgcagGGTTTTAGAAAAGTCGATCCAGATCGATGGGAGTTTGCAAATGAAGGGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCATTGTTTGGGATTCGCACAAGTTCTCTACTACTCTTCTTCCCAGGTACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGCCAGCTCAACACATATgtaagtgctctgaatttgggcttctttcttcttaattttctgtgatcttacctgggttgcttcggttttgctctgggaattggtttttgtattctgggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA