Sequence
atgc intronic sequence ATGC exonic sequenceGTCCACCAGTCTTCCCTCTTGTTGGGCACCTCCCCTTGATGGCCAAGTATGGTCATGATGTGTTCTCAGTCCTTGCCAAAAAATATGGTCCAATTTTCAGgtgagttcacagctcttttcttcatttcccctgcatgggacaaagaagggaatcaagtaaaaagtggtattttagaataccaattttttattgctcttcc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g01100.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G05520.1 (Glycine max), 5'ss of exon 1
GTCCACCAGTCTTCCCTCTTGTTGGGCACCTCCCCTTGATGGCCAAGTATGGTCATGATGTGTTCTCAGTCCTTGCCAAAAAATATGGTCCAATTTTCAGgtgagttcacagctcttttcttcatttcccctgcatgggacaaagaagggaatcaagtaaaaagtggtattttagaataccaattttttattgctcttcc----------
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GCCCACCATCTCTGCCCCTTGTGGGACACCTTCCTTTGTTGGCTAAGTATGGTCCTGATGTGTTCTCAGTCCTTGCCAAACAATATGGTCCGATTTACAGgttagtttac---ttacatatatatttatcgtcaattg----atgatgatgatcaatttgttagta-tatattt--atgccatttttcttccccttcactggattgataa
upper sequence: Vv04s0008g01100.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G05510.1 (Glycine max), 5'ss of exon 1
GTCCACCAGTCTTCCCTCTTGTTGGGCACCTCCCCTTGATGGCCAAGTATGGTCATGATGTGTTCTCAGTCCTTGCCAAAAAATATGGTCCAATTTTCAGgtgagttcacagctcttttcttcatttcccctgcatgggacaaagaagggaatcaagtaaaaagtggtattttagaataccaattttttattgctcttcc---
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GGCCACCATCTCTGCCCCTTGTAGGACACCTTCCCTTGCTGGCAAAGTATGGTCCTGATGTGTTCTCAGTCCTCGCCAAGCAATATGGTCCTATTTACAGgttagtatgcttacatgtatttggtgcaacatatatagtcaattgatg---attaatttgatagtatatatttatgctatttttcttccccggctttcattgg
upper sequence: Vv04s0008g01100.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT2G26170.2 (Arabidopsis thaliana), 5'ss of exon 1
GTCCACCAGTCTTCCCTCTTGTTGGGCACCTCCCCTTGATGGCCAAGTATGGTCATGATGTGTTCTCAGTCCTTGCCAAAAAATATGGTCCAATTTTCAGgtgagt-tcacagctct-tttcttcatttcccctgcatgggacaaaga---agggaatcaagtaaaaagtggtattttagaataccaattttttattgctcttcc
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GTCCAACCGCTATGCCTCTAGTTGGTCACTTGCCCTTGATGGCTAAGTATGGTCCTGATGTCTTCTCCGTTCTTGCTAAGCAATATGGCCCTATTTTCAGgtacctctcctctctctctctctttattctgttttcggtggctagagacctagagtttagtttttaagttttcgtgtcgacaaaaaaaaacagttttagt-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717756|gb|FC064724.1|FC064724EST: GGTCATGATGTGTTCTCAGTCCTTGCCAAAAAATATGGTCCAATTTTCAG GTTCCATGTGGGTAGACAGCCCCTGGTGATTGTAGCAGATGCAGAGCTCTG
genomic: GGTCATGATGTGTTCTCAGTCCTTGCCAAAAAATATGGTCCAATTTTCAGgtgagttcac ... tgtggggtagGTTCCATGTGGGTAGACAGCCCCTGGTGATTGTAGCAGATGCAGAGCTCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCCACCAGTCTTCCCTCTTGTTGGGCACCTCCCCTTGATGGCCAAGTATGGTCATGATGTGTTCTCAGTCCTTGCCAAAAAATATGGTCCAATTTTCAGgtgagttcacagctcttttcttcatttcccctgcatgggacaaagaagggaatcaagtaaaaagtggtattttagaataccaattttttattgctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataccaa