1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CACAAGAAGCAAATTCAAGAGGGTTTGTGTGTTCTGTGGGAGCAACTCTGGTAATAGGAAAGTTTTCAGTGATGCTGCTCTGGAATTGGGAAATGAACTGgtttgttcgtttgtctcgttacaacttctttctgaatctttctttgattaagacaagtgtgcttttccaagctttggtttttgttctcaaaaagggcctt...
species | Vitis vinifera |
transcript | Vv04s0008g01040.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTAATAGGAAAGTTTTCAGTGATGCTGCTCTGGAATTGGGAAATGAACTG GTAAAGAGAAAGATAAACTTAGTCTATGGAGGGGGAAGTGTTGGATTAATGEST: gi|30253208|gb|CB970759.1|CB970759
genomic: GTAATAGGAAAGTTTTCAGTGATGCTGCTCTGGAATTGGGAAATGAACTGgtttgttcgt ... tgggttgcagGTAAAGAGAAAGATAAACTTAGTCTATGGAGGGGGAAGTGTTGGATTAATG
EST: GTAATAGGAAAGTTTTCAGTGATACTGCTCTGGAATTGGGAAATGAACTG GTAAAGAGAAAGATAAACTTAGTCTATGGAGGGGGAAGTGTTGGATTAATGEST: gi|110396809|gb|EC962509.1|EC962509
genomic: GTAATAGGAAAGTTTTCAGTGATGCTGCTCTGGAATTGGGAAATGAACTGgtttgttcgt ... tgggttgcagGTAAAGAGAAAGATAAACTTAGTCTATGGAGGGGGAAGTGTTGGATTAATG
EST: GTAATAGGAAAGTTTTCAGTGATGCTGCTCTGGAATTGGGAAATGAACTG GTAAAGAGAAAGATAAACTTAGTCTATGGAGGGGGAAGTGTTGGATTAATG
genomic: GTAATAGGAAAGTTTTCAGTGATGCTGCTCTGGAATTGGGAAATGAACTGgtttgttcgt ... tgggttgcagGTAAAGAGAAAGATAAACTTAGTCTATGGAGGGGGAAGTGTTGGATTAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAAGAAGCAAATTCAAGAGGGTTTGTGTGTTCTGTGGGAGCAACTCTGGTAATAGGAAAGTTTTCAGTGATGCTGCTCTGGAATTGGGAAATGAACTGgtttgttcgtttgtctcgttacaacttctttctgaatctttctttgattaagacaagtgtgcttttccaagctttggtttttgttctcaaaaagggcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaag