Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTATAGAGATCTGTGAGCTTGAGAGCTGCCATAGACCCATAAAACCCTATCTGTCTCTCTCTTCCTCCCTCCCTCATCAACTACTGAGAAACTTCAGgtattaaatctcattcctaagatttataagtacctgctcgtttgtctatttgttggtggtttgattagggtttgtgacttgaactataagattcttgaaa...

Basic information

species Vitis vinifera
transcript Vv04s0008g00810.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71868224|gb|DT017279.1|DT017279
EST:     CAACTACTGAGAAACTTCAG                         GTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
genomic: CAACTACTGAGAAACTTCAGgtattaaatc ... gtcttcttagGTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
EST: gi|351023086|gb|FQ430961.1|FQ430961
EST:     ATCAACTACTGAGAAACTTCAG                         GTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
genomic: ATCAACTACTGAGAAACTTCAGgtattaaatc ... gtcttcttagGTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
EST: gi|110694685|gb|EE072007.1|EE072007
EST:     ATCAACTACTGAGAAACTTCAG                         GTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
genomic: ATCAACTACTGAGAAACTTCAGgtattaaatc ... gtcttcttagGTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
EST: gi|71865761|gb|DT014816.1|DT014816
EST:     ATCAACTACTGAGAAACTTCAG                         GTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
genomic: ATCAACTACTGAGAAACTTCAGgtattaaatc ... gtcttcttagGTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
EST: gi|110386902|gb|EC951535.1|EC951535
EST:     CCTCCCTCCCTCATCAACTACTGAGAAACTTCAG                         GTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
genomic: CCTCCCTCCCTCATCAACTACTGAGAAACTTCAGgtattaaatc ... gtcttcttagGTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
EST: gi|110397153|gb|EC962876.1|EC962876
EST:     ATCAACTACTGAGAAACTTCAG                         GTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
genomic: ATCAACTACTGAGAAACTTCAGgtattaaatc ... gtcttcttagGTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
EST: gi|110412872|gb|EC978635.1|EC978635
EST:     GAGAAACTTCAG                         GTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
genomic: GAGAAACTTCAGgtattaaatc ... gtcttcttagGTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
EST: gi|110379111|gb|EC944287.1|EC944287
EST:     GAGAAACTTCAG                         GTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
genomic: GAGAAACTTCAGgtattaaatc ... gtcttcttagGTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
EST: gi|110687563|gb|EE065115.1|EE065115
EST:     CTCCCTCATCAACTACTGAGAAACTTCAG                         GTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
genomic: CTCCCTCATCAACTACTGAGAAACTTCAGgtattaaatc ... gtcttcttagGTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
EST: gi|110722171|gb|EE098170.1|EE098170
EST:     ATCAACTACTGAGAAACTTCAG                         GTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA
genomic: ATCAACTACTGAGAAACTTCAGgtattaaatc ... gtcttcttagGTGGGAATTCATGGCTTCCAAACTGGTTCAACTGCAATCCAAGGCTTCCCA