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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTGAACTCGGTTAAGCCATGTAGATCTTATATCAAAGGAAGCTTGGTTACTGGGAAGCCACCTTCCTCTGTGTCTGTCACTGTGCCTGGAAATGGGGgtaaggattcttttgaatattaatatttggcatcagtttatatttaatttgttttcatcttctaaatgtctatgtgactgtcttctcatgactcttgcgg...

Basic information

species Vitis vinifera
transcript Vv04s0008g00770.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32249299|gb|CD715118.1|CD715118
EST:     ACTGGGAAGCCACCTTCCTCTGTGTCTGTCACTGTGCCTGGAAATGGAGG                         -TAGTGGAGTCAATTTTATTGACCATGGCTTGAATGAAGCTGATCCTGAA
genomic: ACTGGGAAGCCACCTTCCTCTGTGTCTGTCACTGTGCCTGGAAATGG-GGgtaaggattc ... tgttatgcagATAGTGGAGTCAATTTTATTGACCATGGCTTGAATGAAGCTGATCCTGAA
EST: gi|161715305|gb|FC068028.1|FC068028
EST:     TACTGGGAAGCCACCTTCCTCTGTGTCTGTCACTGTGCCTGGAAATGGGG                         ATAGTGGAGTCAATTTTATTGACCATGGCTTGAATGAAGCTGATCCTGAAG
genomic: TACTGGGAAGCCACCTTCCTCTGTGTCTGTCACTGTGCCTGGAAATGGGGgtaaggattc ... tgttatgcagATAGTGGAGTCAATTTTATTGACCATGGCTTGAATGAAGCTGATCCTGAAG
EST: gi|32269544|gb|CD718703.1|CD718703
EST:     ACTGGGAAGCCACCTTCCTCTGTGTCTGTCACTGTGCCTGGAAATGGAGG                         -TAGTGGAGTCAATTTTATTGACCATGGCTTGAATGAAGCTGATCCTGAA
genomic: ACTGGGAAGCCACCTTCCTCTGTGTCTGTCACTGTGCCTGGAAATGG-GGgtaaggattc ... tgttatgcagATAGTGGAGTCAATTTTATTGACCATGGCTTGAATGAAGCTGATCCTGAA
EST: gi|27580664|gb|CB003359.1|CB003359
EST:     ACTGGGAAGCCACCTTCCTCTGTGTCTGTCACTGTGCCTGGAAATGGAGG                         -TAGTGGAGTCAATTTTATTGACCATGGCCTGAATGAAGCTGATCCTGAA
genomic: ACTGGGAAGCCACCTTCCTCTGTGTCTGTCACTGTGCCTGGAAATGG-GGgtaaggattc ... tgttatgcagATAGTGGAGTCAATTTTATTGACCATGGCTTGAATGAAGCTGATCCTGAA