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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGATCGGTATTCCTTTCGGGCCGGCGAAGACTTGCCGGAGTCGGTGGACTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaattttcctttccttctcttttcttttctttttgttgccttttgctttatgctttttgcttatattttttttaatcggagtcggcggtggggtt...

Basic information

species Vitis vinifera
transcript Vv03s0180g00010.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|156737324|gb|EV241445.1|EV241445
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|110723541|gb|EE100971.1|EE100971
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTCGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|110357084|gb|EC920382.1|EC920382
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|110356923|gb|EC920101.1|EC920101
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|110388288|gb|EC953023.1|EC953023
EST:     CGCCGTTGTTCCTGTGAAGGATCAAGGCCACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|110359126|gb|EC920097.1|EC920097
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|110719230|gb|EE096967.1|EE096967
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|110720888|gb|EE097202.1|EE097202
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|110718465|gb|EE095330.1|EE095330
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|110356759|gb|EC919821.1|EC919821
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|161718959|gb|FC066379.1|FC066379
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|77588211|gb|DV223315.1|DV223315
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|110722640|gb|EE099045.1|EE099045
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|110359044|gb|EC919877.1|EC919877
EST:     CTGGAGGGAGAAAGGCGCCGGTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|71855403|gb|DT004458.1|DT004458
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGC
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGC
EST: gi|37185279|gb|CF604632.1|CF604632
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|161719824|gb|FC069002.1|FC069002
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|110391796|gb|EC956797.1|EC956797
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|110698843|gb|EE076805.1|EE076805
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|110359109|gb|EC920049.1|EC920049
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAA
EST: gi|37185926|gb|CF605279.1|CF605279
EST:     CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCG                         GGAGTTGCTGGGCATTCTCG
genomic: CTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaatt ... attcatgaagGGAGTTGCTGGGCATTCTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCGATCGGTATTCCTTTCGGGCCGGCGAAGACTTGCCGGAGTCGGTGGACTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGgtgagtaattttcctttccttctcttttcttttctttttgttgccttttgctttatgctttttgcttatattttttttaatcggagtcggcggtggggtt

- - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgggg