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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGTTCTCTTGCTCAATTCCAAAGATCCCTCTGTTACTCCCTTTGTTGAAGAGCTTCAGAGACGGCTCTTGCGTCTCCACCACGCCACTAAGTCACATgtactctctccacctcaatgtatatatatttgtttgtgtgtcctttgattcggttctttctgaattttggtaatgggttttgatttttttttcttttttg...

Basic information

species Vitis vinifera
transcript Vv03s0091g01190.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161709597|gb|FC061011.1|FC061011
EST:     AAGAGCTTCAGAGACGGCTCTTGCGTCTCCACCACGCCACTAAGTCACAT                         GAGGGTGGAATGCATGCTACTAATACAG
genomic: AAGAGCTTCAGAGACGGCTCTTGCGTCTCCACCACGCCACTAAGTCACATgtactctctc ... gggtgtaaagGAGGGTGGAATGCATGCTACTAATACAG
EST: gi|161710809|gb|FC059873.1|FC059873
EST:     AAGAGCTTCAGAGACGGCTCTTGCGTCTCCACCACGCCACTAAGTCACAT                         GAGGGTGGAGTGCATGCTACTAATACAGACTGGACAAATCTATATGAT
genomic: AAGAGCTTCAGAGACGGCTCTTGCGTCTCCACCACGCCACTAAGTCACATgtactctctc ... gggtgtaaagGAGGGTGGAATGCATGCTACTAATACAGACTGGACAAATCTATATGAT
EST: gi|161709097|gb|FC058381.1|FC058381
EST:     AAGAGCTTCAGAGACGGCTCTTGCGTCTCCACCACGCCACTAAGTCACAT                         GAGGGTGGAATGCAT
genomic: AAGAGCTTCAGAGACGGCTCTTGCGTCTCCACCACGCCACTAAGTCACATgtactctctc ... gggtgtaaagGAGGGTGGAATGCAT
EST: gi|161707947|gb|FC056967.1|FC056967
EST:     CTCCACCACGCCACTAAGTCACAT                         GAGGGTGGAATGCATGCTACTAATACAGACTGGACAAATCTATATGATCTG
genomic: CTCCACCACGCCACTAAGTCACATgtactctctc ... gggtgtaaagGAGGGTGGAATGCATGCTACTAATACAGACTGGACAAATCTATATGATCTG
EST: gi|110688888|gb|EE067952.1|EE067952
EST:     AAGAGCTTCAGAGACGGCTCTTGCGTCTCCACCACGCCACTAAGTCACAT                         GAGGGTGGAATGCATGCTACTAATACAGACTGGACAAATCTATATGATCTG
genomic: AAGAGCTTCAGAGACGGCTCTTGCGTCTCCACCACGCCACTAAGTCACATgtactctctc ... gggtgtaaagGAGGGTGGAATGCATGCTACTAATACAGACTGGACAAATCTATATGATCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGGTTCTCTTGCTCAATTCCAAAGATCCCTCTGTTACTCCCTTTGTTGAAGAGCTTCAGAGACGGCTCTTGCGTCTCCACCACGCCACTAAGTCACATgtactctctccacctcaatgtatatatatttgtttgtgtgtcctttgattcggttctttctgaattttggtaatgggttttgatttttttttcttttttg

- - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccacc