Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAAGCGCAGTTCGGAGAGGGTTCAGGTCTCCATCTGCAAAGGCCTCGTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATgtaattcctctcttttatgcatattatgcctatttttactgacttttggggttgaaattttgggcctttaatagaataattttgagtgcttggacgggta...

Basic information

species Vitis vinifera
transcript Vv03s0091g00700.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110713462|gb|EE089402.1|EE089402
EST:     GTTTGACCACATACCTCAACAGTTCAGAGAGGGAAATCTCCAAGACGGAT                         TGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
genomic: GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATgtaattcctc ... tcttttgcagTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
EST: gi|110686908|gb|EE063865.1|EE063865
EST:     GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGAT                         TGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTACACCTT
genomic: GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATgtaattcctc ... tcttttgcagTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
EST: gi|28968092|gb|CB347125.1|CB347125
EST:     ACCTAAACGGTTCAGAGAGGGAAATCTCCAAGACGGAT                         TGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
genomic: ACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATgtaattcctc ... tcttttgcagTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
EST: gi|26257375|gb|CA808438.1|CA808438
EST:     GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGAT                         TGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
genomic: GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATgtaattcctc ... tcttttgcagTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
EST: gi|351025662|gb|FQ426676.1|FQ426676
EST:     GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGAT                         TGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
genomic: GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATgtaattcctc ... tcttttgcagTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
EST: gi|351030338|gb|FQ432276.1|FQ432276
EST:     GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGAT                         TGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
genomic: GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATgtaattcctc ... tcttttgcagTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
EST: gi|71866707|gb|DT015762.1|DT015762
EST:     GTTTGACCACATACCTAAACGGTTCAGAGAGGGAAATCTCCAAGACGGAT                         TGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
genomic: GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATgtaattcctc ... tcttttgcagTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
EST: gi|110710998|gb|EE087695.1|EE087695
EST:     GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGAT                         TGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTACACCTT
genomic: GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATgtaattcctc ... tcttttgcagTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
EST: gi|26257779|gb|CA808842.1|CA808842
EST:     GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGAT                         TGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
genomic: GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATgtaattcctc ... tcttttgcagTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
EST: gi|352795065|gb|FQ477175.1|FQ477175
EST:     GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGAT                         TGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
genomic: GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATgtaattcctc ... tcttttgcagTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
EST: gi|110685602|gb|EE062466.1|EE062466
EST:     AGAGGGAAATCTCCAAGACGGAT                         TGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
genomic: AGAGGGAAATCTCCAAGACGGATgtaattcctc ... tcttttgcagTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
EST: gi|26264973|gb|CA816036.1|CA816036
EST:     TTGACCCACATACCTAAACGGTTCAGAGAGGGAAAATCTCCAAGACGGAT                         TGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
genomic: TTGA-CCACATACCTAAACAGTTCAGAGAGGG-AAATCTCCAAGACGGATgtaattcctc ... tcttttgcagTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
EST: gi|26258048|gb|CA809111.1|CA809111
EST:     GTTTGACCGCATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGAT                         TGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
genomic: GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATgtaattcctc ... tcttttgcagTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
EST: gi|26267206|gb|CA818269.1|CA818269
EST:     GTTTGACCACATACCTAAACGGTTCAGAGAGGGAAATCTCCAAGACGGAT                         TGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
genomic: GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATgtaattcctc ... tcttttgcagTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
EST: gi|18458865|gb|BM437143.1|BM437143
EST:     GTTTGACCACATACCTAAACGGTTCAGAGAGGGAAATCTCCAAGACGGAT                         TGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT
genomic: GTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATgtaattcctc ... tcttttgcagTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAGAAGCGCAGTTCGGAGAGGGTTCAGGTCTCCATCTGCAAAGGCCTCGTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATgtaattcctctcttttatgcatattatgcctatttttactgacttttggggttgaaattttgggcctttaatagaataattttgagtgcttggacgggta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaataa