Sequence
atgc intronic sequence ATGC exonic sequenceATTCCACGGGGCAGCTGTGGAGGGAGCAGAAGCTCGCCGGCGTGCCCGCCGGATTCTTCGTGAGCACCGGAACACAGGGTGGCGGCCAAGAGACTACAGCgtaagtgtttgttccagtttctcttgggattttcttgagaatttcaactttttctgtggtgctatgcggaaaaaatcacaattgcatggatttctgcacc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g02120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G042136_T01 (Zea mays), 5'ss of exon 2
ATTCCACGGGGCAGCTGTGGAGGGAGCAGAAGCTCGCCGGCGTGCCCGCCGGATTCTTCGTGAGCACCGGAACACAGGGTGGCGGCCAAGAGACTACAGCgtaagtgtttgttccagtttctcttgggattttcttgagaatttcaactttttctgtggtgctatgcggaaaaaatcacaattgcat--ggatttctgcacc-
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ACTCCACCGGCTCGCTCTGGGAGGCGCAGAAGCTCGCTGGGAAGCCCGCCGGGTTCTTCGTCAGCACCGGAACGCAGGGCGGGGGGCAGGAGACCACGGCgtaagaatctctttactattctttcaggtttctttt---atttaatacctgttacatgatcttgaaggaagaattgaatttttgcattggaacacttgctatt
upper sequence: Vv03s0063g02120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G12790.1 (Glycine max), 5'ss of exon 1
ATTCCACGGGGCAGCTGTGGAGGGAGCAGAAGCTCGCCGGCGTGCCCGCCGGATTCTTCGTGAGCACCGGAACACAGGGTGGCGGCCAAGAGACTACAGCgtaagtgtttgttccagtttct--cttgg--gattttcttgagaatttcaactttttctgtggtgctatgcggaaaaaatcacaattgcatggatttctgcacc
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ATTCGACCGGTCAGTTGTGGAGAGAGCAGAAGCTGGCAGGGGTGCCTGCTGGCTTCTTTGTCAGCACTGGCACTCAGGGTGGAGGCCAAGAAACCACAGCgtaagaaggccttttattttctgccttcattgatgcatgcataaataagagccttgctcttcattttattttctttaa--tggaacttcagaattttatcta--
upper sequence: Vv03s0063g02120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ31975 (Selaginella moellendorffii), 5'ss of exon 1
ATTCCACGGGGCAGCTGTGGAGGGAGCAGAAGCTCGCCGGCGTGCCCGCCGGATTCTTCGTGAGCACCGGAACACAGGGTGGCGGCCAAGAGACTACAGCgtaagt--gtttgttccagtttc-tcttgggattttcttgagaatttcaactttttctgtggtgctatgcggaaaaaatcacaattgcatggatttctgcacc
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ATTCTACTGGGAGTTTGTGGCAGCAGCAAAAGCTGGCTGGAAAACCAGCCGGATTCTTCGTGAGCAGTGGAACCCAAGGTGGTGGCCAAGAAACGACGGCgtaagtcagtccgagttatttccatcttttgcttcgagtgatcttctgaacttatgacttgcttctag-----------------------------------
upper sequence: Vv03s0063g02120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ37875 (Selaginella moellendorffii), 5'ss of exon 1
ATTCCACGGGGCAGCTGTGGAGGGAGCAGAAGCTCGCCGGCGTGCCCGCCGGATTCTTCGTGAGCACCGGAACACAGGGTGGCGGCCAAGAGACTACAGCgtaagt--gtttgttccagtttc-tcttgggattttcttgagaatttcaactttttctgtggtgctatgcggaaaaaatcacaattgcatggatttctgcacc
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ATTCTACTGGGAGTTTGTGGCAGCAGCAAAAGCTGGCTGGAAAACCAGCCGGATTCTTCGTGAGCACTGGAACCCAAGGTGGTGGCCAAGAAACGACAGCgtaagtcagtccgagttatttccatcttttgcttcgagtgatcttctgaacttatgacttgcttctag-----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110391231|gb|EC956192.1|EC956192EST: GGATTCTTCGTGAGCACCGGAACACAGGGTGGCGGCCAAGAGACTACAGC TTGGACAGCAATCACCCAGTTAGCTCACCATGGGATGCTCTATGTTCCCAT
genomic: GGATTCTTCGTGAGCACCGGAACACAGGGTGGCGGCCAAGAGACTACAGCgtaagtgttt ... attgttgcagTTGGACAGCAATCACCCAGTTAGCTCACCATGGGATGCTCTATGTTCCCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCCACGGGGCAGCTGTGGAGGGAGCAGAAGCTCGCCGGCGTGCCCGCCGGATTCTTCGTGAGCACCGGAACACAGGGTGGCGGCCAAGAGACTACAGCgtaagtgtttgttccagtttctcttgggattttcttgagaatttcaactttttctgtggtgctatgcggaaaaaatcacaattgcatggatttctgcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat