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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGAACAGAAGATCTCTAGAAATGGCCACGAAGCAAGAAGCTGGGAGGCACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAGgtaagctcttcattcccctcgaggcttcatcagtcttcgtccttttaatctgtattttctcgttctctgatttttcttcttcttgttgcag

Basic information

species Vitis vinifera
transcript Vv03s0063g00140.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0063g00140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G11530.2 (Glycine max), 5'ss of exon 1
--AAGGAACAGAAGATCTCTAGAAATGGCCACGAAGCAA--GAAGCTGGGAGGCACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAGgtaagctcttcat----tcccctcgaggcttcatcagtcttcgtccttttaatctgtattttctcgttctctgatttttcttcttcttgttgcag--------------------------------------------------------
   || ||  | ||| |     |||     || |  |||  |||||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||| ||||||    |   ||    | || | |       |  |         |||||  ||| |   || |  || | |  | | |  |  |  ||||| |                                                         
TATAGCAATGGCAGAAC----AAAACCAAAACCAGACAACTGAAGCTGGAAGGCACCAAGAGGTTGGCCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAGgtaccaccccaattacattcctttgttaaaaaagaaaaaaaaaatctttttttcttttggtttttattttattttatataatagttatgttgaaaacaaaaatctttttttttcgggggggtgtttgataaaatggttatgttgtgtttag

upper sequence: Vv03s0063g00140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA07G33780.1 (Glycine max), 5'ss of exon 1
--AAGGAACAGAAGATCTCTAGAAATGGCCACGAAGCAA--GAAGCTGGGAGGCACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAGgta--agctc---ttcattcccct---cgaggcttcatcagtcttcgtccttttaatctgtat-tttctcgttctctgatttttct----------tcttcttgttgcag-------------------------------
   || ||  | ||| |     |||     || || |||  |||||||| |||||||| |||||||| |||||||||||| | ||||||||||||||||| ||||||  | | |   | ||||||  |     |      |  |       || ||||    | |   ||| |  |    || || |  |          |||  || |||  |                               
TATAGCAATGGCAGAAC----AAAACCAAAACCAAACAACTGAAGCTGGAAGGCACCAAGAGGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAGgtaccaccccaattgcattcctttgataaaaagaaaaagaaaaaaaatctttttctcttttgggtttttgataaaatggttatgttgaaaaaaaaatctattttttgggggtttttgataaaatggttatgctgtgtttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161707477|gb|FC055995.1|FC055995
EST:     ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
genomic: ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAGgtaagctctt ... cttgttgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
EST: gi|352795208|gb|FQ477318.1|FQ477318
EST:     ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCCTGAATCCATGAAGGAG
genomic: ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAGgtaagctctt ... cttgttgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
EST: gi|33409666|gb|CF215293.1|CF215293
EST:     ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
genomic: ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAGgtaagctctt ... cttgttgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
EST: gi|110392855|gb|EC957377.1|EC957377
EST:     TGCAGAGTGATGCTCTTTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
genomic: TGCAGAGTGATGCTCTTTATCAGgtaagctctt ... cttgttgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
EST: gi|110392663|gb|EC956866.1|EC956866
EST:     ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCCTGAATCCATGAAGGAG
genomic: ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAGgtaagctctt ... cttgttgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
EST: gi|77586769|gb|DV222527.1|DV222527
EST:     ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCCTGAATCCATGAGGGAG
genomic: ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAGgtaagctctt ... cttgttgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
EST: gi|33407984|gb|CF213611.1|CF213611
EST:     ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTACCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCCTGAATCCATGAAGGAG
genomic: ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAGgtaagctctt ... cttgttgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
EST: gi|34548696|gb|CF516928.1|CF516928
EST:     ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCCTGAATCCATGAAGGAG
genomic: ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAGgtaagctctt ... cttgttgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
EST: gi|37185411|gb|CF604764.1|CF604764
EST:     ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCCTGAATCCATGAAGGAG
genomic: ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAGgtaagctctt ... cttgttgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
EST: gi|110378003|gb|EC943111.1|EC943111
EST:     GAGCCTTTTGCAGAGTGATGCTCTTTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCCTGAATCCATGAAGGAG
genomic: GAGCCTTTTGCAGAGTGATGCTCTTTATCAGgtaagctctt ... cttgttgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
EST: gi|34550193|gb|CF518411.1|CF518411
EST:     ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCCTGAATCCATGAAGGAG
genomic: ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAGgtaagctctt ... cttgttgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
EST: gi|110372307|gb|EC936462.1|EC936462
EST:     CTTTTGCAGAGTGATGCTCTTTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCCTGAATCCATGAAGGAG
genomic: CTTTTGCAGAGTGATGCTCTTTATCAGgtaagctctt ... cttgttgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
EST: gi|110378272|gb|EC943395.1|EC943395
EST:     GCAGAGTGATGCTCTTTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
genomic: GCAGAGTGATGCTCTTTATCAGgtaagctctt ... cttgttgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
EST: gi|110365089|gb|EC928834.1|EC928834
EST:     GATGCTCTTTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
genomic: GATGCTCTTTATCAGgtaagctctt ... cttgttgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
EST: gi|352794669|gb|FQ475167.1|FQ475167
EST:     ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCCTGAATCCATGAAGGAG
genomic: ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAGgtaagctctt ... cttgttgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
EST: gi|33409385|gb|CF215012.1|CF215012
EST:     ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG
genomic: ACCAGGAGGTTGGCCACAAGAGCCTTTTGCAGAGTGATGCTCTTTATCAGgtaagctctt ... cttgttgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCCCGAATCCATGAAGGAG