Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGTCGATCATGGTCCCAACAGCAAGCTAGCCTTTGATTGGACACTTATCCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCAgtatgtctcttttcatcttcatcttcgtttggaattttttcccccattttttgcctaatttttctaggttttatttcag

Basic information

species Vitis vinifera
transcript Vv03s0038g04750.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110387373|gb|EC952034.1|EC952034
EST:     CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCA                         GCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCACTAATGGAGAAGC
genomic: CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCAgtatgtctct ... tttatttcagGCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCTCTAATGGAGAAGC
EST: gi|37189576|gb|CF608925.1|CF608925
EST:     CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCA                         GCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCACTAATGGAGAAGC
genomic: CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCAgtatgtctct ... tttatttcagGCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCTCTAATGGAGAAGC
EST: gi|110370899|gb|EC934504.1|EC934504
EST:     CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCA                         GCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCACTAATGGAGAAGC
genomic: CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCAgtatgtctct ... tttatttcagGCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCTCTAATGGAGAAGC
EST: gi|30135668|gb|CB921006.1|CB921006
EST:     CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCA                         GCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCACTAATGGAGAAGC
genomic: CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCAgtatgtctct ... tttatttcagGCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCTCTAATGGAGAAGC
EST: gi|71885609|gb|DT034664.1|DT034664
EST:     CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCA                         GCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCACTAATGGAGAAGC
genomic: CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCAgtatgtctct ... tttatttcagGCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCTCTAATGGAGAAGC
EST: gi|110408626|gb|EC974264.1|EC974264
EST:     CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCA                         GCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCACTAATGGAGAAGC
genomic: CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCAgtatgtctct ... tttatttcagGCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCTCTAATGGAGAAGC
EST: gi|71868674|gb|DT017729.1|DT017729
EST:     CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCA                         GCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCACTAATGGAGAAGC
genomic: CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCAgtatgtctct ... tttatttcagGCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCTCTAATGGAGAAGC
EST: gi|110406689|gb|EC972271.1|EC972271
EST:     CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCA                         GCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCACTAATGGAGAAGC
genomic: CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCAgtatgtctct ... tttatttcagGCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCTCTAATGGAGAAGC
EST: gi|110372177|gb|EC936326.1|EC936326
EST:     CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCA                         GCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCACTAATGGAGAAGC
genomic: CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCAgtatgtctct ... tttatttcagGCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCTCTAATGGAGAAGC
EST: gi|110412213|gb|EC977954.1|EC977954
EST:     CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCA                         GCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCACTAATGGAGAAGC
genomic: CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCAgtatgtctct ... tttatttcagGCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCTCTAATGGAGAAGC
EST: gi|110368596|gb|EC932584.1|EC932584
EST:     CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCA                         GCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCACTAATGGAGAAGC
genomic: CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCAgtatgtctct ... tttatttcagGCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCTCTAATGGAGAAGC
EST: gi|30134771|gb|CB920109.1|CB920109
EST:     CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCA                         GCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCACTAATGGAGAAGC
genomic: CCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCAgtatgtctct ... tttatttcagGCGTGTCGAATGAGGTTGTTTACGAGTCAAGTCGAGCTCTAATGGAGAAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGTCGATCATGGTCCCAACAGCAAGCTAGCCTTTGATTGGACACTTATCCACCTCTGCAGACTCGCTGATACCATTCACCTCGTCAACGCCGTATCCAgtatgtctcttttcatcttcatcttcgtttggaattttttcccccattttttgcctaatttttctaggttttatttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT