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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTCCTCCGATAAGTCTCAGATTTGGCAGCAGCTCCAGCACTTCTCTCACTTCCCCGATTTCAACAACTACCTCGTCTTCATTCTCGCCCGCGCTGAGgtgtgctcttctgatatctgaagttttgaaggggtttcgttgatttgggggttttggggatcgtgggttgggtagggttttgttggaatggtgggccggg...

Basic information

species Vitis vinifera
transcript Vv03s0038g02830.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 1
TCCTTCCTCCGATAAGTCTCAGATTTGGCAGCAGCTCCAGCACTTCTCTCACTTCCCCGATTTCAACAACTACCTCGTCTTCATTCTCGCCCGCGCTGAGgtgt--gctcttctgatatctgaagttttgaaggggtttcgttgatttgggggttttggggatcgtgggttgggtagggttttgttggaatggt--gggccggg
| ||||| |||||||| ||||||||||||| || || |||| || ||| ||| |||| || |||||||| ||||||| ||||||  || |||| || ||||| |    || |  |  |  |     ||        |     || |       | |    ||  | || | |  | | | ||| ||||  || |    | |   
TTCTTCCGCCGATAAGGCTCAGATTTGGCAACACCTTCAGCGCTACTCGCACCTCCCTGACTTCAACAATTACCTCGCCTTCATCTTCTCCCGTGCCGAGgtatttattcattcgccaatttccacttcactcttctgctactgctactactatctacaagagtgaggatcgccttgcggttt-ttggtttgatttaagtc---

upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 1
TCCTTCCTCCGATAAGTCTCAGATTTGGCAGCAGCTCCAGCACTTCTCTCACTTCCCCGATTTCAACAACTACCTCGTCTTCATTCTCGCCCGCGCTGAGgtgtgctcttctgatatctgaagttttgaaggggtttcgttgatttgggggttttggggatcgtgggttgggtagggttttgttggaatggt--gggccggg---
| ||||| |||||||| ||||||||||||| || || |||| || ||| ||  |||| || |||||||| ||||||| ||||||  || ||||||| ||||| |  || |  |  |  |     |||     | |   | |  ||      | | |   |  |  | | |  | | ||||| ||||  || |    | | |    
TTCTTCCGCCGATAAGGCTCAGATTTGGCAACACCTTCAGCGCTACTCGCATCTCCCTGACTTCAACAATTACCTCGCCTTCATCTTCTCCCGCGCCGAGgtat--tcattcgccaattcccactttcttctgctactgctacttcta---tctagaatagtgacgatcgccttgcgtttttttggtttgatttaagtctgtatg

upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT2G16950.2 (Arabidopsis thaliana), 5'ss of exon 1
TCCTTCCTCCGATAAGTCTCAGATTTGGCAGCAGCTCCAGCACTTCTCTCACTTCCCCGATTTCAACAACTACCTCGTCTTCATTCTCGCCCGCGCTGAGgtgtg------ctcttctgatatctgaagttttgaaggggtttcgttgatttgggggttttggggatcgtgggttgggtagggttttgttggaatggtgggccggg
  |   |   || ||||||||||||||| ||||||| || ||||||||||| || || |||||||||||||| ||||||||||| ||||  ||||||||||| |        |  |||  | |||      ||   | | |||  ||  ||    |  ||   |  ||      |  || |  |    | |||  | ||       
CTCCGTCGTTGACAAGTCTCAGATTTGGAAGCAGCTTCAACACTTCTCTCAGTTTCCTGATTTCAACAACTATCTCGTCTTCATCCTCGTTCGCGCTGAGgttttggaacttttctctactctctcttcgcttcctgagattttttttcttctccgtatt---gactcaatctatttgtcgaatgagttcggatcgttgaatt---