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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACATTTATTTTATTCCATCGGATCTCACTCTCTCATCATCTTCTGCGCCATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAGgtgcgtttcgattcagatccattctctttattattatttttttattttctttaatttgatttcttaatgttgtttcaataactgttttcaagaatcgatc...

Basic information

species Vitis vinifera
transcript Vv03s0038g02760.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110730165|gb|EE106929.1|EE106929
EST:     CATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAG                         GTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCT
genomic: CATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAGgtgcgtttcg ... gtactttcagGTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCT
EST: gi|71862417|gb|DT011472.1|DT011472
EST:     CATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAG                         GTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCT
genomic: CATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAGgtgcgtttcg ... gtactttcagGTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCT
EST: gi|71861168|gb|DT010223.1|DT010223
EST:     CATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAG                         GTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCT
genomic: CATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAGgtgcgtttcg ... gtactttcagGTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCT
EST: gi|71864966|gb|DT014021.1|DT014021
EST:     CATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAG                         GTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCT
genomic: CATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAGgtgcgtttcg ... gtactttcagGTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCT
EST: gi|110357277|gb|EC920703.1|EC920703
EST:     TGCTCTGCTTTGTCTTGCTCTGTCTCAGATCATAACG                         GTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTC
genomic: TGCTCTGCTTTGTCTTGCTCTGTCTCAG------A-Ggtgcgtttcg ... gtactttcagGTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTC