1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GATGGATCTGCAGATCTAGCCCCTTGGAACACGGATAAAGTTCTTGGTGGTTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAGgtgagattttttttccctcgtttttggcaagttggatttctgtttggggaagatgttgaattgttgtgattgacggggttttggagatttttctaacttg...
species | Vitis vinifera |
transcript | Vv03s0038g02650.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAG ACTTGTACTATTTCTTTGTCGTGTTGTCGAGCAGAGGACGGAACAATTCAAEST: gi|110699119|gb|EE075838.1|EE075838
genomic: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAGgtgagatttt ... tctgttgtagACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAA
EST: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAG ACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAAEST: gi|294967291|gb|GW840166.1|GW840166
genomic: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAGgtgagatttt ... tctgttgtagACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAA
EST: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAG ACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAAEST: gi|71858503|gb|DT007558.1|DT007558
genomic: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAGgtgagatttt ... tctgttgtagACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAA
EST: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAG ACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAAEST: gi|71861861|gb|DT010916.1|DT010916
genomic: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAGgtgagatttt ... tctgttgtagACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAA
EST: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAG ACTTGTACTATTTCTTTGTCGTGTTGTCGAGCAGAGGACGGAACAATTCAAEST: gi|161707903|gb|FC055672.1|FC055672
genomic: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAGgtgagatttt ... tctgttgtagACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAA
EST: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAG ACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAAEST: gi|110684787|gb|EE062462.1|EE062462
genomic: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAGgtgagatttt ... tctgttgtagACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAA
EST: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAG ACTTGTACTATTTCTTTGTCGTGTTGTCGAGCAGAGGACGGAACAATTCAAEST: gi|71864297|gb|DT013352.1|DT013352
genomic: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAGgtgagatttt ... tctgttgtagACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAA
EST: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAG ACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAAEST: gi|161708312|gb|FC057026.1|FC057026
genomic: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAGgtgagatttt ... tctgttgtagACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAA
EST: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAG ACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAAEST: gi|161718621|gb|FC068210.1|FC068210
genomic: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAGgtgagatttt ... tctgttgtagACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAA
EST: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAG ACTTGTACTATTTCTTTGTC--GTTGTCGAGTAGAGGACGGAACAATTCAAEST: gi|156737705|gb|EV241826.1|EV241826
genomic: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAGgtgagatttt ... tctgttgtagACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAA
EST: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAG ACTTGTACTATTTCTTTGTCGTGTTGTCGAGCAGAGGACGGAACAATTCAAEST: gi|110730859|gb|EE108423.1|EE108423
genomic: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAGgtgagatttt ... tctgttgtagACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAA
EST: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAG ACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAAEST: gi|110699744|gb|EE077009.1|EE077009
genomic: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAGgtgagatttt ... tctgttgtagACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAA
EST: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAG ACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAAEST: gi|161710423|gb|FC061118.1|FC061118
genomic: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAGgtgagatttt ... tctgttgtagACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAA
EST: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAG ACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAAGACGGAACAATTCAA
genomic: TTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAGgtgagatttt ... tctgttgtagACTTGTACTATTTCTTTGTCGTGTTGTCGAGTAGAGGACGGAACAATTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGGATCTGCAGATCTAGCCCCTTGGAACACGGATAAAGTTCTTGGTGGTTTTCCCAGATCTTCAGCTGTAGAGCGGCGCAGCTCACCAAATTGTAAAGgtgagattttttttccctcgtttttggcaagttggatttctgtttggggaagatgttgaattgttgtgattgacggggttttggagatttttctaacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaaga