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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTGGAACCCCTGTGGGAAATACAGAGTTGTCAGCACAAAACCGATGCCGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttctcataattgtttgtatatttttgggttaattgtgtgaatttgatgaaaatttgtgctgtttttggtgttcag

Basic information

species Vitis vinifera
transcript Vv03s0038g02510.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71861030|gb|DT010085.1|DT010085
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|161709567|gb|FC061397.1|FC061397
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|349815926|gb|FQ403543.1|FQ403543
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|349816941|gb|FQ405067.1|FQ405067
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|71860212|gb|DT009267.1|DT009267
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|349814439|gb|FQ398879.1|FQ398879
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|294964277|gb|GW838080.1|GW838080
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|110373782|gb|EC938130.1|EC938130
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|349822402|gb|FQ412666.1|FQ412666
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAACCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|30326719|gb|CD009981.1|CD009981
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|110427704|gb|EC994154.1|EC994154
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|110372385|gb|EC936546.1|EC936546
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|71862449|gb|DT011504.1|DT011504
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|349818788|gb|FQ409322.1|FQ409322
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCATCAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|351017651|gb|FQ436004.1|FQ436004
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|351015327|gb|FQ445611.1|FQ445611
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTACTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|349817336|gb|FQ405340.1|FQ405340
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|26266758|gb|CA817821.1|CA817821
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCTAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|349812344|gb|FQ406365.1|FQ406365
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|349811070|gb|FQ406058.1|FQ406058
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|349817177|gb|FQ405182.1|FQ405182
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|30295744|gb|CB972538.1|CB972538
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|349811261|gb|FQ406249.1|FQ406249
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|349808457|gb|FQ405601.1|FQ405601
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|349819566|gb|FQ413450.1|FQ413450
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|71861579|gb|DT010634.1|DT010634
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|349822836|gb|FQ398223.1|FQ398223
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|46917789|gb|CN547118.1|CN547118
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|110376509|gb|EC941574.1|EC941574
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|349810282|gb|FQ401728.1|FQ401728
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|32271798|gb|CD720957.1|CD720957
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|26267099|gb|CA818162.1|CA818162
EST:     CAGGAACCCGCTGGATTGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|349824738|gb|FQ414596.1|FQ414596
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|351028778|gb|FQ433208.1|FQ433208
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|32269541|gb|CD718700.1|CD718700
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
EST: gi|349820992|gb|FQ404245.1|FQ404245
EST:     CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAA                         ATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT
genomic: CGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttc ... tggtgttcagATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTTGGAACCCCTGTGGGAAATACAGAGTTGTCAGCACAAAACCGATGCCGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAgtaatttttctcataattgtttgtatatttttgggttaattgtgtgaatttgatgaaaatttgtgctgtttttggtgttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA