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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTCAGTACCAAACGCCTCTACTGCTTGCCTTTCCTCTTCCCAGgtctctctctcctctctttctgcctggcttttctgctagggttagggtttgggtgtcctactttcttggttgtttttgcacagcaactgacattgaattaggggtttcgttttgaatcag

Basic information

species Vitis vinifera
transcript Vv03s0038g02380.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27581311|gb|CB004006.1|CB004006
EST:     GGTCAGTACCAAACGCCTCTACTGCTTGCCTTTCCTCTTCCCAG                         ATGTGTAGTTGAAGAGTTCAGTTACTTCCAAAAATGAGTGCTTCAAGGTTC
genomic: GGTCAGTACCAAACGCCTCTACTGCTTGCCTTTCCTCTTCCCAGgtctctctct ... tttgaatcagATGTGTAGTTGAAGAGTTCAGTTACTTCCAAAAATGAGTGCTTCAAGGTTC
EST: gi|77585106|gb|DV221640.1|DV221640
EST:     GTACCAAACGCCTCTACTGCTTGCCTTTCCTCTTCCCAG                         ATGTGTAGTTGAAGAGTTCAGTTACTTCCAAAAATGAGTGCTTCAAGGTTC
genomic: GTACCAAACGCCTCTACTGCTTGCCTTTCCTCTTCCCAGgtctctctct ... tttgaatcagATGTGTAGTTGAAGAGTTCAGTTACTTCCAAAAATGAGTGCTTCAAGGTTC
EST: gi|161720989|gb|FC070698.1|FC070698
EST:     GGTCAGTACCAAACGCCTCTACTGCTTGCCTTTCCTCTTCCCAG                         ATGTGTAGTTAAAGAGTTCAGTTACTTCCAAAAATGAGTGCTTCAAGGTTC
genomic: GGTCAGTACCAAACGCCTCTACTGCTTGCCTTTCCTCTTCCCAGgtctctctct ... tttgaatcagATGTGTAGTTGAAGAGTTCAGTTACTTCCAAAAATGAGTGCTTCAAGGTTC