Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctcttcctctctacgattacgcattttcagtgattgtggtttaagatcgtgaattctgagtcagcttttgaacctatctgatggtttctgtggc...

Basic information

species Vitis vinifera
transcript Vv03s0038g02300.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os08g43540.1 (Oryza sativa), 5'ss of exon 1
AAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctcttcctctctacgattacgcattttcagtgattgtggtttaagatcgtgaattctgagtcagcttttgaacctatctgatggtttctgtggc
| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||| | ||||||||||||||  ||||  || ||||  | |  |   | | | |   | |  ||          |||||  |  ||     ||  |   |                        
AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCGTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatc-cttcaacccgccccctccccttcgccgg--atctcacccgcggatcg--atctcccccccaaatccag------------------------

upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os09g36710.1 (Oryza sativa), 5'ss of exon 1
AAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacc--tctcttcctctctacgattacgcattttcagtgattgtggtttaagatcgtgaattctgagtcagcttttgaacctatctgatggtttctgtggc
| |||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||| | ||||||||||||||  ||||||  || | ||||| | ||   |   |   | ||        | | | |  |||    |   |  |  | ||   |                       
AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCTCCGACACCGTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtacccatcacctcctcgcgacctctctccccatacacccccatagatctcatctcgccggtgggggattcgattcgcag----------------------

upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G042604_T01 (Zea mays), 5'ss of exon 1
AAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctcttcctctctacgattacgcattttcagtgattgtggtttaagatcgtgaattctgagtcagcttttgaacctatctgatggtttctgtggc
| |||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| |||||||||||  | ||||||||||||||  |||| |   |  |  |    |   |    ||  ||   ||       |   |||| |    ||  | |    | |   |||    |    || ||  | | 
AGGCCGTCCGCAAGGGCAACGCCGCCGTGGGCGTCCGCGGCACGGACACCGTCGTCCTCGGCGTCGAGAAGAAGTCCACACCCAAGCTCCAGGACTCCAGgtagcaaacccctccgtccctcctttctatcctc--cgaccagatctcgcgatcctcgcctcaaactactatctctgacccgagtttccgtctccctag-

upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G138128_T01 (Zea mays), 5'ss of exon 1
AAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacc--tctcttcctctctacgattacgcattttcagtgattgtggtttaagatcgtgaattctgagtca-gcttttgaacctatctgatggtttctgtggc
| |||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| || || |||||||| ||| | ||||||||||||||  |||| |   | || | || || | ||     ||  ||   ||       |   |||     | ||  | | |    | ||| ||    |    || ||    | 
AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACGGACACCGTCGTCCTCGGTGTGGAGAAGAAGTCAACCCCCAAGCTCCAGGACTCCAGgtagcaaaccctccgtccctcccatcg---atcctc--cgaccagatctcgcgattcccgactcaaactaatatctctgaccccgaattcatgtctccccag-

upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G050467_T01 (Zea mays), 5'ss of exon 1
AAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctcttcctctctacgattacgcattttcagtgattgtggtttaagatcgtgaattctgagtcagcttttgaacctatctgatggtttctgtggc
| |||||||| |||||||||||||| ||||||||||||||   ||||||| |||||||||||||||| |||||||||||| | ||||||||||||||  |||   ||  |   |  || |   | |    |  ||   |       |   || |  |    | |  ||| |        |   |  |   | || |  | 
AGGCCGTCCGCAAGGGCAACGCCGCTGTCGGCGTCCGCGGTGTCGACACCGTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgtcggtacctccccctcc---ctcccatccaccagatctcttgaccccgggcgccgcctcacccaaatcctcccccaaaaaatctccgcag-

upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G049025_T01 (Zea mays), 5'ss of exon 1
AAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctcttcctctctacgattacgcattttcagtgattgtggtttaagatcgtgaattc--tgagtcagcttttgaacctatctgatggtttctgtggc
| |||||||| ||||||||| |||| || ||||| || ||||| |||||||| ||||||  ||| || |||||||||||  | |||||| |||| ||  |||| |   |   |  ||      | |  ||  ||   ||  |    |   ||      | ||  ||   | ||||  |   ||  | |              
AGGCCGTCCGCAAGGGCAACACCGCTGTTGGCGTTCGGGGCACGGACACCATTGTCCTCAACGTTGAGAAGAAGTCCACACCCAAGCTCTAGGATTCCAGgtagcaaaccctccatccctcccttc-tatcgtc--cgaccggatctcgcgacaaccgactcactgctccggcttcgggtactcgcag--------------

upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G05190.1 (Glycine max), 5'ss of exon 1
AAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctcttcctctctacgattacgcat--tttcagtgattgtggtttaagatcgtgaattctgagtcagcttttgaacctatctgatggtttctgtggc-
|||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| |||||||| |||||||| |||||  |||||| ||  || | || |      |   |  ||||  | |||  | |||   ||||  || | | |||    || | | |  |   |||  |  || |  | 
AAGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACAACGTCGTCCTCGGCGTCGAGAAGAAATCCACCGCCAAGCTCCAAGACTCCAGgtaccactactcttatcaattcccccctttcctttcccttattaggttttttaatcggcaaatgttagtt---ttgttagcagagaggattttccctcttccc

upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G23580.1 (Glycine max), 5'ss of exon 1
AAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctcttcctctctacgattacgcattttcagtgattgtggtttaagatcgtgaattctgagtcagcttttgaacctatctgatggtttctgtggc
|||||||||| |||||||||||||||||||||||||||||||||||||   | |||||||||||||| ||||| |||||||| || ||||| |||||  |||||  ||  || | || |        | |          |    ||     |||   | |  |  | | |     || |||  || |       |  | 
AAGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACAATGTTGTCCTCGGCGTCGAGAAGAAATCCACCGCCAAACTCCAAGACTCCAGgtactactactcttttcaattcaattccctccgtttcagatccctttccccttcgattactagggattaaccaagaaaactacgtgttataaggagaagg

upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G51260.1 (Arabidopsis thaliana), 5'ss of exon 1
AAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctcttcctctctacgattacgcattttcagtgattgtggtttaagatcgtgaattctgagtcagcttttgaacct--atctgatggtttctgtggc-
|||||||||| ||||| |||||||||||||| ||||||||||| || ||  ||||||||| |||||||||||| |||||| ||||||||||||| ||  ||||   |||    |||||||   |||    |     | |    | ||||      | | || ||  || ||  ||  |  |   | | | | ||    |||  
AAGCCGTCCGAAAGGGTAACGCCGCCGTCGGAGTCCGCGGCACAGATACTGTCGTCCTCGCCGTCGAAAAGAAATCCACCCCTAAGCTCCAGGATTCCAGgtattgctccga-tctctaccgatacaagatgct--taaaccggatttagtccatttacttttgtttctgcactttgattttggttttaagcttcacctggat

upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G66140.1 (Arabidopsis thaliana), 5'ss of exon 1
AAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctcttcctctctacgattacgcattttcagtgattg--tggtttaagatcgtgaattct--gagtcagcttttgaacctatctgatggtttctgtggc
|||||||||| ||||| |||||||||||||| |||||||| ||||||||| | ||||||| |||||| |||||||||||| | ||||| ||||| ||| |||   | | | | ||||| |  ||      |  ||   |||    |  ||    ||   | || |  ||  | ||||      || || | || |   ||    
AAGCCGTCCGCAAGGGTAACGCCGCCGTCGGTGTCCGCGGTACCGACACCGTTGTCCTCGCCGTCGAGAAGAAGTCCACCCCCAAGCTTCAGGATTCTAGgt-tttatttccatctcttcacttttatcatggcaccaattaacagacttgccctctctacttattggatcctgcttggtttactctcagttgctagttga---

upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ31080 (Selaginella moellendorffii), 5'ss of exon 1
AAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctcttcctctctacgattacgcattttcagtgattgtggtttaagatcgtgaattctgagtcagcttttgaacctatctgatggtttctgtggc
| ||||| || |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| || ||||| |||||||| |||||||||||| |  ||| | | ||   ||      |||  |      ||     || | | |   |||   ||| |||  |||                                
AGGCCGTGCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACTGACACAATCGTGCTCGGCGTGGAGAAGAAATCCACCGCCAAGCTCCAGGACGCGAGgttcgtttccctct------gatctctagacctctagatttctagctcctgattccgaaatctctgtccag-----------------------------

upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ34636 (Selaginella moellendorffii), 5'ss of exon 1
AAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctcttcctctctacgattacgcattttcagtgattgtggtttaagatcgtgaattctgagtcagcttttgaacctatctgatggtttctgtggc
| ||||| || |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| || ||||| |||||||| |||||||||||| |  ||| | | ||   ||      |||  |      ||     || | | |   |||   ||| |||  |||                                
AGGCCGTGCGAAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACTGACACGATCGTGCTCGGCGTGGAGAAGAAATCCACCGCCAAGCTCCAGGACGCGAGgttcgtttccctct------gatctctagacctctagatttctagctcctgattccgaaatctctgtccag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77579793|gb|DV218771.1|DV218771
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|77582230|gb|DV220077.1|DV220077
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110720566|gb|EE096599.1|EE096599
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110429107|gb|EC995595.1|EC995595
EST:     CCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: CCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110397399|gb|EC963134.1|EC963134
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110709999|gb|EE085949.1|EE085949
EST:     ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|351027500|gb|FQ446663.1|FQ446663
EST:     ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|37188036|gb|CF607387.1|CF607387
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110719651|gb|EE094964.1|EE094964
EST:     ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|349824423|gb|FQ417810.1|FQ417810
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|30325035|gb|CD008297.1|CD008297
EST:     ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|71886982|gb|DT036037.1|DT036037
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTGCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110374377|gb|EC939090.1|EC939090
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110373329|gb|EC937554.1|EC937554
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110689512|gb|EE065799.1|EE065799
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|71881184|gb|DT030239.1|DT030239
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110404444|gb|EC969512.1|EC969512
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110412560|gb|EC978313.1|EC978313
EST:     GTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: GTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|161708217|gb|FC057849.1|FC057849
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110720875|gb|EE097181.1|EE097181
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110694460|gb|EE071586.1|EE071586
EST:     ATCGTCCTCGGGGTCGAAAAGAAGT---CCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110685943|gb|EE063115.1|EE063115
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|30323743|gb|CD007005.1|CD007005
EST:     ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|349828363|gb|FQ416316.1|FQ416316
EST:     ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110405293|gb|EC970833.1|EC970833
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110687383|gb|EE064746.1|EE064746
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|351055392|gb|FQ441990.1|FQ441990
EST:     ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGCTAACCTGGATGATCACATCGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|351016010|gb|FQ431965.1|FQ431965
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|71887768|gb|DT036823.1|DT036823
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|37187489|gb|CF606842.1|CF606842
EST:     ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|351056153|gb|FQ453615.1|FQ453615
EST:     ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|349828649|gb|FQ418384.1|FQ418384
EST:     ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|30323883|gb|CD007145.1|CD007145
EST:     ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|352786801|gb|FQ481176.1|FQ481176
EST:     ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|71868761|gb|DT017816.1|DT017816
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|33407204|gb|CF212831.1|CF212831
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|351033091|gb|FQ446444.1|FQ446444
EST:     ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110685316|gb|EE063599.1|EE063599
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|351020256|gb|FQ445863.1|FQ445863
EST:     ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110374277|gb|EC938955.1|EC938955
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|110689039|gb|EE064913.1|EE064913
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|349833170|gb|FQ416548.1|FQ416548
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|351029400|gb|FQ436794.1|FQ436794
EST:     ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|71875885|gb|DT024940.1|DT024940
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|349825959|gb|FQ415764.1|FQ415764
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
EST: gi|71870816|gb|DT019871.1|DT019871
EST:     ATCGTCCTCGGGGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCG                         AACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC
genomic: ATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctct ... ctgttctcagAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctcttcctctctacgattacgcattttcagtgattgtggtttaagatcgtgaattctgagtcagcttttgaacctatctgatggtttctgtggc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc