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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACCACTCTCCCCAGCCTTTCTTCTCTTCCAATCTCCGAATCTCCTCCTCTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggtttttttttttttttaattagatactttggatctagtgtggaggttgaagttgtgttttattttattttaattttctggtggatggttatgcg...

Basic information

species Vitis vinifera
transcript Vv03s0038g01780.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110730538|gb|EE107734.1|EE107734
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|34545318|gb|CF513550.1|CF513550
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCCGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|30321676|gb|CD004938.1|CD004938
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCCGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|110713056|gb|EE088645.1|EE088645
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|110692798|gb|EE068468.1|EE068468
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|27580841|gb|CB003536.1|CB003536
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCCGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|352798567|gb|FQ480592.1|FQ480592
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|161721774|gb|FC070490.1|FC070490
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCCGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|27580521|gb|CB003216.1|CB003216
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCCGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|110713655|gb|EE089776.1|EE089776
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|351015203|gb|FQ445487.1|FQ445487
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCCGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|351055931|gb|FQ453392.1|FQ453392
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCCGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|161719285|gb|FC068261.1|FC068261
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCCGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|351042327|gb|FQ442794.1|FQ442794
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|71855995|gb|DT005050.1|DT005050
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCTGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|110687322|gb|EE064629.1|EE064629
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|33406430|gb|CF212057.1|CF212057
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCCGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|161715107|gb|FC064265.1|FC064265
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCCGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|71860392|gb|DT009447.1|DT009447
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|351038588|gb|FQ464454.1|FQ464454
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCCGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|294963826|gb|GW836701.1|GW836701
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCCGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|30321727|gb|CD004989.1|CD004989
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCCGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|110684631|gb|EE062130.1|EE062130
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|351044839|gb|FQ449093.1|FQ449093
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCCGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|27578848|gb|CB001543.1|CB001543
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCCGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|110705429|gb|EE082267.1|EE082267
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|294966365|gb|GW837616.1|GW837616
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|110720871|gb|EE097170.1|EE097170
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|352790810|gb|FQ478533.1|FQ478533
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|56408461|gb|CX016713.1|CX016713
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|351036824|gb|FQ459346.1|FQ459346
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|71862083|gb|DT011138.1|DT011138
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT
EST: gi|110721976|gb|EE097800.1|EE097800
EST:     CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAA                         TTCTTTGTCGGAGGAAATTGGAAGTGT
genomic: CTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggttt ... gtgtttgcagTTCTTTGTCGGAGGAAATTGGAAGTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGACCACTCTCCCCAGCCTTTCTTCTCTTCCAATCTCCGAATCTCCTCCTCTCCCCGCAAGCCCTGCAGAGGCATCGTCGCCATGGCCGGCTCGGGAAAAgtaagggtttttttttttttttaattagatactttggatctagtgtggaggttgaagttgtgttttattttattttaattttctggtggatggttatgcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG