1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATCACGAGTAGTTTTGTGAGGAAGGTTGAAAAAACCATTGATATGCCTCTTGACAGTGATGTCTTTCGTGTGCCTCTTGGTTATAATGCCCCTCAGCAGgtgtgtggctttttcttcctccatttgctttgcttttcactgggatttgttaattgatttagattcatatactttttcgtttaggtggggtttaagaatt...
species | Vitis vinifera |
transcript | Vv03s0038g00230.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGACAGTGATGTCTTTCGTGTGCCTCTTGGTTATAATGCCCCTCAGCAG GTTCATATAACACAAGGAGATCATGAGGGGAGAGGAGTGATTGTCTCATGGEST: gi|161719236|gb|FC069375.1|FC069375
genomic: TTGACAGTGATGTCTTTCGTGTGCCTCTTGGTTATAATGCCCCTCAGCAGgtgtgtggct ... ccgtgttaagGTTCATATAACACAAGGAGATCATGAGGGGAGAGGAGTGATTGTCTCATGG
EST: TTGACAGTGATGTCTTTCGTGTGCCTCTTGGTTATAATGCCCCTCAGCAG GTTCATATAACACAAGGAGATCATGAGGGGAGAGGAGTGATTGTCTCATGGEST: gi|71857047|gb|DT006102.1|DT006102
genomic: TTGACAGTGATGTCTTTCGTGTGCCTCTTGGTTATAATGCCCCTCAGCAGgtgtgtggct ... ccgtgttaagGTTCATATAACACAAGGAGATCATGAGGGGAGAGGAGTGATTGTCTCATGG
EST: TTGACAGTGATGTCTTTCGTGTGCCTCTTGGTTATAATGCCCCTCAGCAG GTTCATATAACACAAGGAGATCATGAGGGGAGAGGAGTGATTGTCTCATGGEST: gi|161709827|gb|FC059318.1|FC059318
genomic: TTGACAGTGATGTCTTTCGTGTGCCTCTTGGTTATAATGCCCCTCAGCAGgtgtgtggct ... ccgtgttaagGTTCATATAACACAAGGAGATCATGAGGGGAGAGGAGTGATTGTCTCATGG
EST: TTGACAATGATGTCTTTCGTGTGCCTCTTGGTTATAATGCCCCTCAGCAG GTTCATATAACACAAGGAGATCATGAGGGGAGAGGAGTGAT
genomic: TTGACAGTGATGTCTTTCGTGTGCCTCTTGGTTATAATGCCCCTCAGCAGgtgtgtggct ... ccgtgttaagGTTCATATAACACAAGGAGATCATGAGGGGAGAGGAGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCACGAGTAGTTTTGTGAGGAAGGTTGAAAAAACCATTGATATGCCTCTTGACAGTGATGTCTTTCGTGTGCCTCTTGGTTATAATGCCCCTCAGCAGgtgtgtggctttttcttcctccatttgctttgcttttcactgggatttgttaattgatttagattcatatactttttcgtttaggtggggtttaagaatt
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