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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGTGTTTGTATTGTTCAACAGTTCATGGCCAAAGCCCGGGCTCCCAGACGAACCCTAGACTCTTACACAATCAAATCTATCAATAAAACAATTCGAGgtgagccaaaattttctcggaaatttttttcatttgctggaaaattgttttattttttcggaaaatttcctctatcttacgccgcccaaggagccgactcttgctaacatgcgccgttcccgttttgcag

Basic information

species Vitis vinifera
transcript Vv03s0038g00160.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27582108|gb|CB004803.1|CB004803
EST:     ACGAACCCTAGACTCTTACACAATCAAATCTATCAATAAAACAATTCGAG                         CCGGCGACTGCGTTCTGATGCGGCCGTCGGACTCGTCGAAGCCGTCGTACG
genomic: ACGAACCCTAGACTCTTACACAATCAAATCTATCAATAAAACAATTCGAGgtgagccaaa ... cgttttgcagCCGGCGACTGCGTTCTGATGCGGCCGTCGGACTCGTCGAAGCCGTCGTACG
EST: gi|110391870|gb|EC956881.1|EC956881
EST:     CTAGACTCTTACACAATCAAATCTATCAATATAACAATTCGAG                         CCGGCGACTGCGTTCTGATGCGGCCGTCGGACTCGTCGAAGCCGTCGTACG
genomic: CTAGACTCTTACACAATCAAATCTATCAATAAAACAATTCGAGgtgagccaaa ... cgttttgcagCCGGCGACTGCGTTCTGATGCGGCCGTCGGACTCGTCGAAGCCGTCGTACG
EST: gi|71875325|gb|DT024380.1|DT024380
EST:     ACGAACCCTAGACTCTTACACAATCAAATCTATCAATAAAACAATTCGAG                         CCGGCGACTGCGTTCTGATGCGGCCGTCGGACTCGTCGAAGCCGTCGTACG
genomic: ACGAACCCTAGACTCTTACACAATCAAATCTATCAATAAAACAATTCGAGgtgagccaaa ... cgttttgcagCCGGCGACTGCGTTCTGATGCGGCCGTCGGACTCGTCGAAGCCGTCGTACG