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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCATCGACTTCTCCTTACTCACTTCTGGTGATCCTGATCAACGCTCCAGAGCCATCCAGGACCTTGACCAAGCCTGTCTGGAATGGGGCTTCTTCATGgtaatcgccacatggaattcaattgaattttaatgttttgtgtgtgatagtagatgcatcatgtatgtgtattgatgttgatgtgttgctag

Basic information

species Vitis vinifera
transcript Vv03s0017g00830.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27582179|gb|CB004874.1|CB004874
EST:     GAGCCATCCAGGACCTTGACCAAGCCTGTCTGGAATGGGGCTTCTTCATG                         TTGATCAATCACGGTGTGCCGGAGAGTCTGATGACGGGGATGATTGAGGCG
genomic: GAGCCATCCAGGACCTTGACCAAGCCTGTCTGGAATGGGGCTTCTTCATGgtaatcgcca ... gtgttgctagTTGATCAATCACGGTGTGCCGGAGAGTCTGATGACGGGGATGATTGAGGCG
EST: gi|110357301|gb|EC920744.1|EC920744
EST:     GAGCCATCCAGGACCTTGACCAAGCCTGTCTGGAATGGGGCTTCTTCATG                         TTGATCAATCACGGTGTGCCGGAGAGTCTGATGACGGGGATGATTGAGGCG
genomic: GAGCCATCCAGGACCTTGACCAAGCCTGTCTGGAATGGGGCTTCTTCATGgtaatcgcca ... gtgttgctagTTGATCAATCACGGTGTGCCGGAGAGTCTGATGACGGGGATGATTGAGGCG
EST: gi|161716353|gb|FC066525.1|FC066525
EST:     GAGCCATCCAGGACCTTGACCAAGCCTGTCTGGAATGGGGCTTCTTCATG                         TTGATCAATCACGGTGTGCCGGAGAGTCTGATGACGGGGATGATTGAGGCG
genomic: GAGCCATCCAGGACCTTGACCAAGCCTGTCTGGAATGGGGCTTCTTCATGgtaatcgcca ... gtgttgctagTTGATCAATCACGGTGTGCCGGAGAGTCTGATGACGGGGATGATTGAGGCG