1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTTGCCCATTATCAAGTCCTTGTCGCTTTCCGTTGGGAGTAAACCGGGCGATCCATCTGCCAGGAAACTCGGCGCTTATCTCGTTCAGTCCCAATTTCAGgtttgcttttccattcccttttcatttggtcatttatatgtttggttgttgagaaaatatcagataataatattagattttcattgtttcaatgccggga...
species | Vitis vinifera |
transcript | Vv03s0017g00640.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCCATCTGCCAGGAAACTCGGCGCTTATCTCGTTCAGTCCCAATTTCAG TCTGCTGGTAACTCTAGTGCTCTTTTCCTGACTGCTGCAGCTCAAAACATGEST: gi|32269844|gb|CD719003.1|CD719003
genomic: ATCCATCTGCCAGGAAACTCGGCGCTTATCTCGTTCAGTCCCAATTTCAGgtttgctttt ... tgattgacagTCTGCTGGTAACTCTAGTGCTCTTTTCCTGACTGCTGCAGCTCAAAACATG
EST: ATCCATCTGCCAGGAAACTCGGCGCTTATCTCGTTCAGTCCCAATTTCAG TCTGCTGGTAACTCTAGTGCTCTTTTCCTGACTGCTGCAGCTCAAAACATGEST: gi|294966383|gb|GW839490.1|GW839490
genomic: ATCCATCTGCCAGGAAACTCGGCGCTTATCTCGTTCAGTCCCAATTTCAGgtttgctttt ... tgattgacagTCTGCTGGTAACTCTAGTGCTCTTTTCCTGACTGCTGCAGCTCAAAACATG
EST: ATCCATCTGCCAGGAAACTCGGCGCTTATCTCGTTCAGTCCCAATTTCAG TCTGCTGGTAACTCTAGTGCTCTTTTCCTGACTGCTGCAGCTCAAAACATGEST: gi|219555506|gb|FG984593.1|FG984593
genomic: ATCCATCTGCCAGGAAACTCGGCGCTTATCTCGTTCAGTCCCAATTTCAGgtttgctttt ... tgattgacagTCTGCTGGTAACTCTAGTGCTCTTTTCCTGACTGCTGCAGCTCAAAACATG
EST: ATCCATCTGCCAGGAAACTCGGCGCTTATCTCGTTCAGTCCCAATTTCAG TCTGCTGGTAACTCTAGTGCTCTTTTCCTGACTGCTGCAGCTCAAAACATG
genomic: ATCCATCTGCCAGGAAACTCGGCGCTTATCTCGTTCAGTCCCAATTTCAGgtttgctttt ... tgattgacagTCTGCTGGTAACTCTAGTGCTCTTTTCCTGACTGCTGCAGCTCAAAACATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGCCCATTATCAAGTCCTTGTCGCTTTCCGTTGGGAGTAAACCGGGCGATCCATCTGCCAGGAAACTCGGCGCTTATCTCGTTCAGTCCCAATTTCAGgtttgcttttccattcccttttcatttggtcatttatatgtttggttgttgagaaaatatcagataataatattagattttcattgtttcaatgccggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaa