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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCTGCCGATGCTTCAGCTTCATCACGGCCTTGACTGCCATTCTCTGCATTTGCGTCAATGTCCTCTCCGCCGTCCGATCCTTCAAGGACGGATCTGATgtgcgtaatatcactgctttttattttattttattctttgccttttcaagtgtggagttggtgcttgatgtttgtatggcgttccgtag

Basic information

species Vitis vinifera
transcript Vv03s0017g00540.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0017g00540.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G07230.1 (Glycine max), 5'ss of exon 1
CGTCTGCCGATGCTTCAGCTTCATCACGGCCTTGACTGCCATTCTCTGCATTTGCGTCAATGTCCTCTCCGCCGTCCGATCCTTCAAGGACGGATCTGATgtgcgtaatatcactgctttttattttattttattctttg----ccttttcaagtgtggagttggtgcttgatgtttgtatggcgttccgtag
 |  ||| |||||||||||||| ||||  |  |  | ||||||||||||||   |||||||||||||||||||||||| ||||||||  ||| |||||| ||     || || ||   | |   | | |   | |||| |    ||  | |     |   |||   |  | || ||| | |||  ||| |   
AGCGTGCAGATGCTTCAGCTTCCTCACCTCTCTCGCCGCCATTCTCTGCATCGCCGTCAATGTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaac--atctctctctctctctctctctccaaatcttcgatctccgctcctcactttccgttaccgtctaatatttat-tggt-ttcag---

upper sequence: Vv03s0017g00540.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA07G30080.1 (Glycine max), 5'ss of exon 1
CGTCTGCCGATGCTTCAGCTTCATCACGGCCTTGACTGCCATTCTCTGCATTTGCGTCAATGTCCTCTCCGCCGTCCGATCCTTCAAGGACGGATCTGATgtgcgtaatatcactgctttttattttattttattctttgccttttcaagtgtggagttggtgcttgatgtttgtatggcgtt--ccgtag
 |  ||| | |||||||||||  ||||  |  |  | ||||||||||||||   ||||||  |||||||||||||||| ||||||||  ||| |||||| ||      | || ||   | |   | | | |     | | |  | ||   |    | ||   | ||   || |   | | |||      ||
AGCGTGCAGGTGCTTCAGCTTTTTCACCTCTCTCGCCGCCATTCTCTGCATCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaatacctctctctctctctctctctctctctaaatctacaatctccgcttatcactttccg-ttaccgtctaatttgagttggtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863897|gb|DT012952.1|DT012952
EST:     TTTGCGTCAATGTCCTCTCCGCCGTCCGATCCTTCAAGGACGGATCTGAT                         GTTTTCGATGGGATTTTTCGGTGTTATGCTGTTGTGATTGCGTTATTTGTG
genomic: TTTGCGTCAATGTCCTCTCCGCCGTCCGATCCTTCAAGGACGGATCTGATgtgcgtaata ... cgttccgtagGTTTTCGATGGGATTTTTCGGTGTTATGCTGTTGTGATTGCGTTATTTGTG