1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTGGGTTTTGCTTTCCGGCGAAAATCAGCAAAAGGGTGTTCTGCTCCAGCACAATTGAAGGTGCGGAGAAGCTTTCCCCTTCTCAATCTCGGGTGCCCAGgtgcgttttacctttgatttcttcgtattttgttgttttgtcactttaaggttttgaaataggcgcaattggttttttttttttttttcaattttctagc...
species | Vitis vinifera |
transcript | Vv02s0154g00140.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAATTGAAGGTGCGGAGAAGCTTTCCCCTTCTCAATCTCGGGTGCCCAG GATGGTAAGTAAAGGCTGCAAGCTAGTGGGATGTGGCTCAGCTGTACCAAGEST: gi|161710420|gb|FC061115.1|FC061115
genomic: ACAATTGAAGGTGCGGAGAAGCTTTCCCCTTCTCAATCTCGGGTGCCCAGgtgcgtttta ... atttctacagGATTGTAAGTAAAGGCTGCAAGCTAGTTGGATGTGGCTCAGCTGTACCAAG
EST: ACAATTGAAGGTGCGGAGAAGCTTTCCCCTTCTCAATCTCGGGTGCCCAG GATTGTAAGTAAAGGCTGCAAGCTAGTTGGATGTGGCTCAGCTGTACCAAGEST: gi|110685871|gb|EE062980.1|EE062980
genomic: ACAATTGAAGGTGCGGAGAAGCTTTCCCCTTCTCAATCTCGGGTGCCCAGgtgcgtttta ... atttctacagGATTGTAAGTAAAGGCTGCAAGCTAGTTGGATGTGGCTCAGCTGTACCAAG
EST: ACAATCGAAGGTGCGGAGAAGCTTTCCCCTTCTCAATCTCGGGTGCCCAG GATTGTAAGTAAAGGCTGCAAGCTAGTTGGATGTGGCTCAGCTGTACCAAGEST: gi|71864497|gb|DT013552.1|DT013552
genomic: ACAATTGAAGGTGCGGAGAAGCTTTCCCCTTCTCAATCTCGGGTGCCCAGgtgcgtttta ... atttctacagGATTGTAAGTAAAGGCTGCAAGCTAGTTGGATGTGGCTCAGCTGTACCAAG
EST: ACAATCGAAGGTGCGGAGAAGCTTTCCCCTTCTCAATCTCGGGTGCCCAG GATTGTAAGTAAAGGCTGCAAGCTAGTTGGATGTGGCTCAGCTGTACCAAGEST: gi|351018419|gb|FQ439231.1|FQ439231
genomic: ACAATTGAAGGTGCGGAGAAGCTTTCCCCTTCTCAATCTCGGGTGCCCAGgtgcgtttta ... atttctacagGATTGTAAGTAAAGGCTGCAAGCTAGTTGGATGTGGCTCAGCTGTACCAAG
EST: ACAATTGAAGGTGCGGAGAAGCTTTCCCCTTCTCAATCTCGGGTGCCCAG GATTGTAAGTAAAGGCTGCAAGCTAGTTGGATGTGGCTCAGCTGTACCAAG
genomic: ACAATTGAAGGTGCGGAGAAGCTTTCCCCTTCTCAATCTCGGGTGCCCAGgtgcgtttta ... atttctacagGATTGTAAGTAAAGGCTGCAAGCTAGTTGGATGTGGCTCAGCTGTACCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGGTTTTGCTTTCCGGCGAAAATCAGCAAAAGGGTGTTCTGCTCCAGCACAATTGAAGGTGCGGAGAAGCTTTCCCCTTCTCAATCTCGGGTGCCCAGgtgcgttttacctttgatttcttcgtattttgttgttttgtcactttaaggttttgaaataggcgcaattggttttttttttttttttcaattttctagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaatag