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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCAGCTTCTTCCAAGGAAAAGCAGTGCTCAACCAAGGTGTTGGCTACTCTGTTATTCTTGGTTTTGGTGCCTTCTTTGCTGTCTTTACCTCTTTTCTGgtaaatttcacagcacccatgtcttgattttttattttttattttttattttaggtgtttttggctgattcccatgtggtagttggtaactactgaagat...

Basic information

species Vitis vinifera
transcript Vv02s0033g01370.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0033g01370.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G14790.1 (Glycine max), 5'ss of exon 1
GAGCAGCTTCTTCCAAGGAAAAGCAGTGCTCAACCAAGGTGTTGGCTACTCTGTTATTCTTGGTTTTGGTGCCTTCTTTGCTGTCTTTACCTCTTTTCTGgtaaatt-tcacagcacccatgtcttgattttttattttttattttttattttaggt-----gtttttggctgattcccatgtggtagt-tggtaactactgaagat
|| ||| |||||  |||| ||| ||||||| || || |||||||| |||||||| ||||||||||||||||| |||||||| ||||| ||||||||  ||||   |  ||     | |  | ||||  | |  |  |||| || ||||  || | ||      |   || || |    |   || |  | |  ||| |||       
GACCAGTTTCTTTGAAGGCAAACCAGTGCTTAATCAGGGTGTTGGTTACTCTGTCATTCTTGGTTTTGGTGCTTTCTTTGCCGTCTTCACCTCTTTCTTGgttcgtaatcctcaaatctgtttctttctctagttattttgatcttttgattgaagtagaaaatcactgcctaaccttctcatgtttttctcataattac-------

upper sequence: Vv02s0033g01370.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G45380.1 (Arabidopsis thaliana), 5'ss of exon 1
GAGCAGCTTCTTCCAAGGAAAAGCAGTGCTCAACCAAGGTGTTGGCTACTCTGTTATTCTTGGTTTTGGTGCCTTCTTTGCTGTCTTTACCTCTTTTCTGgtaaatttcacagcacccatgtcttgattttttattttttattttttattttaggtgtttttggctgattcccatgtggtagttggtaactactgaagat---------
|||||||||||||  ||| |   | |||||| | ||||| ||||||||| | || ||||||||||||||||| |||||||| ||||| || |||||| |||| | ||||        | | |||  |||    ||  ||| || |  |    | |     ||   |||||  |  |||         || || |    ||         
GAGCAGCTTCTTCGGAGGCACGACGGTGCTCGATCAAGGCGTTGGCTACGCCGTGATTCTTGGTTTTGGTGCTTTCTTTGCCGTCTTCACATCTTTTTTGgttagtttc--------cgtttctgaattacaaatactttcttatgaaaagcaagacgacttctatgatttgctcgtgaccacaaaaaa-tagtagtcatatggtttat