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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAAGCAAAGCCCAAGAGAGAAGGAAGGGAAAACCAGAGAAAACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctcttccccattgcggtttggatccgaaggggcttttttttattattatttattttattttttgggtctttgattcattcacaagaccacatg...

Basic information

species Vitis vinifera
transcript Vv02s0033g01160.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110713215|gb|EE088951.1|EE088951
EST:     AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|161718564|gb|FC069317.1|FC069317
EST:     AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|352791235|gb|FQ477520.1|FQ477520
EST:     ACCTGCTGCTCAGAACTCCCACCATTTCTTTCATCCAATCCCCATTTCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACACGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|110726338|gb|EE102030.1|EE102030
EST:     ACCTGCTGCTCAGAACTCCAACCATTTCTTTCATCTAATCCCCATTTCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACACGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|352795000|gb|FQ477110.1|FQ477110
EST:     ACCTGCTGCTCAGAACTCCAACCATTTCTTTCATCCAATCCCCATTTCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACACGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|352773280|gb|FQ470867.1|FQ470867
EST:     ACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
genomic: ACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|110713285|gb|EE089070.1|EE089070
EST:     AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|71860480|gb|DT009535.1|DT009535
EST:     AACTGCTGCTCAGAACTCCAACCATTTCTTTTATCTAATCCCCATTCCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACACGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|110698939|gb|EE077013.1|EE077013
EST:     AACTGCTGCTCACAACTCCAACCATTTCTTTCGCCTAATCCCCATTCCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|110712750|gb|EE088067.1|EE088067
EST:     AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|110727083|gb|EE103459.1|EE103459
EST:     ACCTGCTGCTCAGAACTCCAACCATTTCTTTCATCTAATCCCCATTTCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACACGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|352765035|gb|FQ473683.1|FQ473683
EST:     AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|110712841|gb|EE088241.1|EE088241
EST:     AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|161707316|gb|FC056844.1|FC056844
EST:     AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|110711968|gb|EE089049.1|EE089049
EST:     AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|110711233|gb|EE087512.1|EE087512
EST:     AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|110711111|gb|EE087284.1|EE087284
EST:     AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|110711472|gb|EE087993.1|EE087993
EST:     AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
EST: gi|294966579|gb|GW837714.1|GW837714
EST:     AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAG                         TTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC
genomic: AACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctc ... ttgttgatagTTGAGAGAAGGAAGCAATGGACTTTTTCTTTAAGGGACTGAACGCGGATGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCAAGCAAAGCCCAAGAGAGAAGGAAGGGAAAACCAGAGAAAACTGCTGCTCAGAACTCCAACCATTTCTTTCGTCTAATCCCCATTCCAGgtgctctctcttccccattgcggtttggatccgaaggggcttttttttattattatttattttattttttgggtctttgattcattcacaagaccacatg

- - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcccc