1 5' 3' |
CGCCCTCTTGATGGATGTCCTCAGAAAGATTTCGGCGGGCGATAGGTATCTGCGCTCCGGTTTGTGGTCCACGAAGGGAGATTATCCGCTTGGTTGGAAGgtaggctggtacttccttggtaggtcatgttggtcacgtacttagtcacgtagttcaaataacctatgaataatatttaggttaaaaatatatatgtaaa...
species | Vitis vinifera |
transcript | Vv02s0025g04730.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGTCCACGAAGGGAGATTATCCGCTTGGTTGGAAG CTAGGGGGAAAGCGAGTTGGAATTGTGGGACTGGGGAACATTGGCTCTGAAEST: gi|22009986|gb|BQ795020.1|BQ795020
genomic: GGTCCACGAAGGGAGATTATCCGCTTGGTTGGAAGgtaggctggt ... atttttgcagCTAGGGGGAAAGCGAGTTGGAATTGTGGGACTGGGGAACATTGGCTCTGAA
EST: GGTCCACGAANGGNAGATTATCCGCTTGGTTGAAAG CTAGGGGGAAAAGCGAGTTGGAATTGTGGGACTGGGGAACATTGGCTCTGAEST: gi|110359962|gb|EC922367.1|EC922367
genomic: GGTCCACGAA-GGGAGATTATCCGCTTGGTTGGAAGgtaggctggt ... atttttgcagCTAGGGGG-AAAGCGAGTTGGAATTGTGGGACTGGGGAACATTGGCTCTGA
EST: TGCGCTCCGGTTTGTGGTCCACGAAGGGAGATTATCCGCTTGGTTGGAAG CTAGGGGGAAAGCGAGTTGGAATTGTGGGACTAGGGAACATTGGCTCTGAAEST: gi|30136626|gb|CB921964.1|CB921964
genomic: TGCGCTCCGGTTTGTGGTCCACGAAGGGAGATTATCCGCTTGGTTGGAAGgtaggctggt ... atttttgcagCTAGGGGGAAAGCGAGTTGGAATTGTGGGACTGGGGAACATTGGCTCTGAA
EST: TGCGCTCCGGTTTGTGGTCCACGAAGGGAGATTATCCGCTTGGTTGGAAG CTAGGGGGANAGCGAGTTGGAATTGTGGGACTGGGGAACATTGGCTCTGAA
genomic: TGCGCTCCGGTTTGTGGTCCACGAAGGGAGATTATCCGCTTGGTTGGAAGgtaggctggt ... atttttgcagCTAGGGGGAAAGCGAGTTGGAATTGTGGGACTGGGGAACATTGGCTCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCCTCTTGATGGATGTCCTCAGAAAGATTTCGGCGGGCGATAGGTATCTGCGCTCCGGTTTGTGGTCCACGAAGGGAGATTATCCGCTTGGTTGGAAGgtaggctggtacttccttggtaggtcatgttggtcacgtacttagtcacgtagttcaaataacctatgaataatatttaggttaaaaatatatatgtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata