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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTACCAACTTTCTCGAGAAACTGAGCTCGGAGAAAATGACGAAAAATGTGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatctcgcctctgatttctctttcttatcgttgattttcttgccagtggctttgtcctctgtttggtttccgagaaaatggaggaaaaatgaga...

Basic information

species Vitis vinifera
transcript Vv02s0025g04580.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G32480.1 (Glycine max), 5'ss of exon 1
-----ATTTACCAACTTTCTCGAGAAACTGAGCTCGGAGAAAATGACGAAAAATGTGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatctcgcctctgatttctctttcttatcgttgattttcttgcca-----gtggctttgtcctctgtttggtttccgagaaaatggaggaaaaatgaga-----------------------------------------
            ||  |||||    |  ||  |||           | ||   ||||||||| || ||||||||||||||||||||||| ||||| ||    |||||  || |  | |    || ||| |||     | |  |||||||  | |        | | | |||  | ||||| ||||   | |     ||     | |                                             
AGAAAGAGAGGGAAAATTCTCTTCCA--TGGCCTCTTCACGCCCTGCCAA---TGTGGGAATCCTTGCCATGGACATCTACTTCCCTCCCACCTGCGTCACCCAGgt--ctcaatttg----tggtttttctcataaagctctgatttttatactttcttttttgttatgttttgtgttttgttttgtaaagctgcgatttttattcttggtttggttatgttgtgttttttgttttgatgggttgtgcag

upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA09G27380.1 (Glycine max), 5'ss of exon 1
-----ATTTACCAACTTTCTCGAGAAACTGAGCTCGGAGAAAATGACGAAAAATGTGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgac-----------tgatctcgc----ctctgatttct---ctttcttatcgttg-attttctt-------gccagtggctttgtcctctgtttggtttccgagaaaatggaggaaaaatgaga-------
            ||  |||||    |  ||  |||           | ||   ||||||||| || ||||||||||||||||||||||| ||||| ||    |||||  |           |  ||||      |||||| || |   ||||||| | |||   |||| ||       ||       ||| | || |||||||||     |    |   |     ||| |        
AGAAAGAGAGGGAAAATTCTCTTCCA--TGGCCTCTTTACGCCCTGCCAA---TGTGGGAATCCTTGCCATGGACATCTACTTCCCTCCCACCTGCGTCACCCAGgtctcaatttgtgtttttttctcataaagctctgacttttatactttctttttgttatgttttgttttgtaaagctgtgatttttattctttgtttggttatgttgtgtgttttgttttgatgggttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110387333|gb|EC951991.1|EC951991
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|110698402|gb|EE075860.1|EE075860
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|110709565|gb|EE085137.1|EE085137
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71860473|gb|DT009528.1|DT009528
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|351015524|gb|FQ447353.1|FQ447353
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|110729426|gb|EE105370.1|EE105370
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|110699371|gb|EE076321.1|EE076321
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|110691612|gb|EE069914.1|EE069914
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|294966823|gb|GW837842.1|GW837842
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71860824|gb|DT009879.1|DT009879
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71861327|gb|DT010382.1|DT010382
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71860522|gb|DT009577.1|DT009577
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|352778070|gb|FQ467123.1|FQ467123
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|33401501|gb|CF207128.1|CF207128
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|34545276|gb|CF513508.1|CF513508
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|352777936|gb|FQ466989.1|FQ466989
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|110699704|gb|EE076934.1|EE076934
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|30297572|gb|CB974366.1|CB974366
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71862441|gb|DT011496.1|DT011496
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71859989|gb|DT009044.1|DT009044
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|352785913|gb|FQ475916.1|FQ475916
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|352794809|gb|FQ475304.1|FQ475304
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|110698626|gb|EE076340.1|EE076340
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|30255111|gb|CB971558.1|CB971558
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71864278|gb|DT013333.1|DT013333
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71860705|gb|DT009760.1|DT009760
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|110698484|gb|EE076038.1|EE076038
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|161719369|gb|FC064848.1|FC064848
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71861812|gb|DT010867.1|DT010867
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71864766|gb|DT013821.1|DT013821
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71862941|gb|DT011996.1|DT011996
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|349823636|gb|FQ415046.1|FQ415046
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71863130|gb|DT012185.1|DT012185
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71861453|gb|DT010508.1|DT010508
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71860640|gb|DT009695.1|DT009695
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71864508|gb|DT013563.1|DT013563
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71857514|gb|DT006569.1|DT006569
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|71864646|gb|DT013701.1|DT013701
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA
EST: gi|351020029|gb|FQ439846.1|FQ439846
EST:     TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAG                         GAAGCTCTGGAAGTTCATGATGGTGTAAGTAAGGGAAAGTACACTATTGGA
genomic: TGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatc ... tgcaaaatagGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTACCAACTTTCTCGAGAAACTGAGCTCGGAGAAAATGACGAAAAATGTGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGgtgactgatctcgcctctgatttctctttcttatcgttgattttcttgccagtggctttgtcctctgtttggtttccgagaaaatggaggaaaaatgaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaat