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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGTTCCCACGTGGAGCTGATGCTTATATTGATGACATAAACGAGCTCATTCCTCTTACTGGCGGCACCATCAGGACTGCAATTGATACAGGCTGTGGTgtaagtaaaggcttcaactccttgtccatttaggccttctatattaccattgttttgtagtttattgcagtagctaacaggagtctcctactgtttcttgattgggtgtgttaag

Basic information

species Vitis vinifera
transcript Vv02s0025g03200.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03200.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G164916_T03 (Zea mays), 5'ss of exon 3
CATGTTCCCACGTGGAGCTGATGCTTATATTGATGACATAAACGAGCTCATTCCTCTTACTGGCGGCACCATCAGGACTGCAATTGATACAGGCTGTGGTgtaagtaaaggcttcaactccttgtccatttaggccttctatattaccattgttttgtagtttattgcagtagctaacaggagtctcctactgtttcttgattgggtgtgttaag
 |||||||||| ||| || ||||||||||||||||||||||| |  ||  | ||  | | ||  |||| |||| | |||||  ||||||| || ||||| || ||| |  |   |||     |||           ||||||  |||  |     |||  ||  ||     |  |    |  |     || | | | ||| ||| |||||     
TATGTTCCCACATGGTGCCGATGCTTATATTGATGACATAAATGCCCTTGTACCATTAAATGAAGGCAACATCCGAACTGCGCTTGATACTGGATGTGGAgtgagtgaccggaccaa-----tgt-----------ttctatgatactgtc----tgtgattccttctcaaaatttgtggatga----tagtatct-ttgcttgtgtgtgcag--

upper sequence: Vv02s0025g03200.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G36550.1 (Glycine max), 5'ss of exon 1
CATGTTCCCACGTGGAGCTGATGCTTATATTGATGACATAAACGAGCTCATTCCTCTTACTGGCGGCACCATCAGGACTGCAATTGATACAGGCTGTGGTgtaagtaaaggcttcaactccttgtccatttaggccttctatattaccattgttttgtagtttattgcagtagctaacaggagtctcctactgtttcttgattgggtgtgttaag
 ||||| ||||||||||||||||| || ||||| ||||| || ||||| ||||| || ||  | || || ||||| |||||||||||||| ||||||||||||||| ||    |  | ||  |   ||||||     |||||    | |||  ||| | |  | || || || | | |       |   | |  |  | |||| | |        
AATGTTTCCACGTGGAGCTGATGCATACATTGACGACATTAATGAGCTTATTCCCCTCACAAGTGGTACTATCAGAACTGCAATTGATACTGGCTGTGGTgtaagttaa--tctatattctatcctcattta---tctctatgcctctatttattttttgagttttacactatcaaccta----ttagaaatcatgttagattagataa------

upper sequence: Vv02s0025g03200.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G03000.1 (Glycine max), 5'ss of exon 1
CATGTTCCCACGTGGAGCTGATGCTTATATTGATGACATAAACGAGCTCATTCCTCTTACTGGCGGCACCATCAGGACTGCAATTGATACAGGCTGTGGTgtaagtaaaggcttcaactccttgtccatttaggcct-tctatattaccattgttttgtagtttattgcagta-gctaacaggagtctcctactgtttcttgattgggtgtgttaag
 ||||| ||||||||||||||||| || ||||| ||||| || ||||| ||||| || ||  | || || ||||| |||||||||||||| || |||||||||||| ||    |  | ||  |   |||||| | || |   | |    ||| |||||   || ||| |  |  | || ||  |       |   ||| | ||              
AATGTTTCCACGTGGAGCTGATGCATACATTGACGACATTAATGAGCTTATTCCCCTCACAAGTGGTACTATCAGAACTGCAATTGATACTGGTTGTGGTgtaagttaa--tctatattctatcctcatttatgtctatgcctctatttatttttttgagtttaatttctatgtgttatcaataag-----aaattttttagaccat----------

upper sequence: Vv02s0025g03200.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G33170.1 (Arabidopsis thaliana), 5'ss of exon 1
CATGTTCCCACGTGGAGCTGATGCTTATATTGATGACATAAACGAGCTCATTCCTCTTACTGGCGGCACCATCAGGACTGCAATTGATACAGGCTGTGGTgtaagtaaaggcttcaactccttgtccatttaggccttctatattaccattgttttgtagtttatt-gcagtagctaacaggagtctcctactgtttct--tgattgggtgtgttaag-------------------------------------------------------------------------
 ||||| |||||||||||||||||||| |||||||| ||       ||||||||||||||||  ||  |||| || || || ||||||||||| ||||||||||||   |  |||   |     |   | || || | ||||  || | ||| |||||  |||| | |   |   |     |  | |  |  |  ||      | ||  | ||||||                                                                          
AATGTTTCCACGTGGAGCTGATGCTTACATTGATGATATTGCTAGACTCATTCCTCTTACTGATGGAGCCATTAGAACAGCTATTGATACAGGATGTGGTgtaagtttcgatttcttgttaccatttttatatgcat-ctat-ctatctttgatttgttttttaatagttctgttttcttagtttatttttttaattacaacaaatgattatgttaaaatacgacttcttgattggttaccaaatcggaaggataatagtttaattaattcggtatcatttggttgtttag