1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAAATTCTTCTTCACCGTCATCCTCGTCATCGTCATCGTGGATTCATTTGCGAACGGTTCTCTTAGTCGTTGCTTCCTCCTCACCAGTCTCCACTGATAGgtgagtccctctgtcctcttcgttcctctgcttttacatttaggctccggttgcttccacagaaaaaaaagaatagaagagaaaatttctgtgcagttaa...
species | Vitis vinifera |
transcript | Vv02s0025g02530.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGAACGGTTCTCTTAGTCGTTGCTTCCTCCTCACCAGTCTCCACTGATAG AGGCACTCTTAAATCACCATGGTCTCGCCGGAGAAGAAAACATGCCCTCCTEST: gi|349832656|gb|FQ422014.1|FQ422014
genomic: CGAACGGTTCTCTTAGTCGTTGCTTCCTCCTCACCAGTCTCCACTGATAGgtgagtccct ... tgcatttcagAGGCACTCTTAAATCACCATGGTCTCGCCGGAGAAGAAAACATGCCCTCCT
EST: CGAACGGTTCTCTTAGTCGTTGCTTCCTCCTCACCAGTCTCCACTGATAG AGGCACTCTTAAATCACCATGGTCTCGCCGGAGAAGAAAACATGCCCTCCTEST: gi|37184744|gb|CF604098.1|CF604098
genomic: CGAACGGTTCTCTTAGTCGTTGCTTCCTCCTCACCAGTCTCCACTGATAGgtgagtccct ... tgcatttcagAGGCACTCTTAAATCACCATGGTCTCGCCGGAGAAGAAAACATGCCCTCCT
EST: CGAACGGTTCTCTTAGTCGTTGCTTCCTCCTCACCAGTCTCCACTGATAG AGGCACTCTTAAATCACCATGGTCTCGCCGGAGAAGAAAACATGCCCTCCTEST: gi|110391840|gb|EC956843.1|EC956843
genomic: CGAACGGTTCTCTTAGTCGTTGCTTCCTCCTCACCAGTCTCCACTGATAGgtgagtccct ... tgcatttcagAGGCACTCTTAAATCACCATGGTCTCGCCGGAGAAGAAAACATGCCCTCCT
EST: CGAACGGTTCTCTTAGTCGTTGCTTCCTCCTCACCAGTCTCCACTGATAG AGGCACTCTTAAATCACCATGGTCTCGCCGGAGAAGAAAACATGCCCTCCT
genomic: CGAACGGTTCTCTTAGTCGTTGCTTCCTCCTCACCAGTCTCCACTGATAGgtgagtccct ... tgcatttcagAGGCACTCTTAAATCACCATGGTCTCGCCGGAGAAGAAAACATGCCCTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAATTCTTCTTCACCGTCATCCTCGTCATCGTCATCGTGGATTCATTTGCGAACGGTTCTCTTAGTCGTTGCTTCCTCCTCACCAGTCTCCACTGATAGgtgagtccctctgtcctcttcgttcctctgcttttacatttaggctccggttgcttccacagaaaaaaaagaatagaagagaaaatttctgtgcagttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaa