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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTCAAGGCAGTCCTGTGTGGGTGTGCTTGAGCTTGTAATGACTTCGCAGAAGATTAACTATGCACCGGAGTTGGACAAAATCTGCAAAAGCCTTGGGgttggtttctttcccctactatgtacttgagatcgaaaattttgcaaatcactttcttttgatcatggttgagttcatattcgtggcttgcttggtaataaaattggatcttcttacatcattgcttgatag

Basic information

species Vitis vinifera
transcript Vv02s0025g02060.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g02060.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G30180.1 (Glycine max), 5'ss of exon 2
ACCTTCAAGGCAGTCCTGTGTGGGTGTGCTTGAGCTTGTAATGACTTCGCAGAAGATTAACTATGCACCGGAGTTGGACAAAATCTGCAAAAGCCTTGGGgttgg-tttctttcccctactatgtacttgagatcgaaaattttgcaaatcactttcttttgatcatggttgagttcatattcgtggcttgcttggtaataaaattggatcttcttacatcattgcttgatag
 | | || | ||||| ||||||| |||  | |||||  |||||||||| ||||||||||||||||| || ||| | || ||||||||||||  ||||| |||||| ||||||| || |||||| || |  |  | | |   |||||   |||  ||            | |||||||    |  ||| |     |    ||  ||   || | ||                  
GCTTGCAGGACAGTCATGTGTGGCTGTAGTGGAGCTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGgttggatttctttaccgtactatttattataagttgcatgctttgc---tcatgtt------------ggtgagttcggtgtgatggttaaaaggtatttattatcatatgtact------------------

upper sequence: Vv02s0025g02060.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA09G25230.1 (Glycine max), 5'ss of exon 3
ACCTTCAAGGCAGTCCTGTGTGGGTGTGCTTGAGCTTGTAATGACTTCGCAGAAGATTAACTATGCACCGGAGTTGGACAAAATCTGCAAAAGCCTTGGGgttgg-tttctttc---ccctactatgtacttgagatcgaaaattttgcaaatcactttcttttgatcatggttgagttcatattcgtggcttgcttggtaataaaattggatcttcttacatcattgcttgatag
 | | || | ||||| ||||||| |||  | ||| |  |||||||||| ||||||||||||||||| || ||| | || ||||||||||||  ||||| |||||| |||||||    |  |||||| || |  |    | |   |||||  ||   |||  |  | ||   ||   | | ||||     |  |  ||  |||                                  
GCTTGCAGGACAGTCATGTGTGGCTGTAGTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGgttggatttcttttgaactgtactatttaatataagctgcatgctttgctcata--tttggtgagttcgatgtgatggttatatcatatgtattattattaa----------------------------------

upper sequence: Vv02s0025g02060.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA20G29960.1 (Glycine max), 5'ss of exon 4
ACCTTCAAGGCAGTCCTGTGTGGGTGTGCTTGAGCTTGTAATGACTTCGCAGAAGATTAACTATGCACCGGAGTTGGACAAAATCTGCAAAAGCCTTGGGgttggtttctttcccctactatgtacttgagatcgaaaattttgcaaatcactttcttttgatcatggttgagttcatattcgtggcttgcttggtaataaaattggatcttcttacatcattgcttgatag
||||||||  ||||| ||||| |||||  | ||| |  |||||||||| ||||| ||||||||||| || ||| | || ||||||||||||  ||||| |||||| ||  ||     ||| ||    | | | | |   | ||  |  |  ||    ||||   |   |   ||  ||  |      ||      ||  || |||                           
ACCTTCAATACAGTCATGTGTTGGTGTATTGGAGTTGATAATGACTTCACAGAAAATTAACTATGCTCCCGAGGTTGATAAAATCTGCAAAGCCCTTGAGgttgggtttctttta--actttgctaattatacccatg-tattatagtttcctcatgtttggcaaatatcacgtg-atgct-acaaattatagtatatcaagatt---------------------------