1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCACCATCGGAGTCTCTCCCCAGAAATGAGACCGTTGGTGGATACATCTTTGTCTGCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTGgtaagcccccgtctctgtttctctgattctatttaccatttttcagtgtccttctttggggtttgattctgattctgttttgcgttggtgggtatctctc...
species | Vitis vinifera |
transcript | Vv02s0025g01720.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTCTGCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTG GTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTACEST: gi|29783652|gb|CB349968.2|CB349968
genomic: TGTCTGCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
EST: GCAAGAGAATCTCAAGAGACAGCTCTTTG GTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTACEST: gi|110406653|gb|EC972233.1|EC972233
genomic: GCAAGAGAATCTCAAGAGACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
EST: TGTCTGCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTG GTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTACEST: gi|352777407|gb|FQ474041.1|FQ474041
genomic: TGTCTGCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
EST: AGAGAATCTCAAGAGACAGCTCTTTG GTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTACEST: gi|34547922|gb|CF516154.1|CF516154
genomic: AGAGAATCTCAAGAGACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
EST: CTGCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTG GTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTACEST: gi|30137123|gb|CB922461.1|CB922461
genomic: CTGCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
EST: AGAGACAGCTCTTTG GTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTACEST: gi|352768383|gb|FQ469558.1|FQ469558
genomic: AGAGACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
EST: GAATCTCAAGAGACAGCTCTTTG GTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTACEST: gi|110726023|gb|EE103098.1|EE103098
genomic: GAATCTCAAGAGACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
EST: TGTCTGCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTG GTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTACEST: gi|32458755|gb|CD799929.1|CD799929
genomic: TGTCTGCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
EST: CAAGAGACAGCTCTTTG GTTTGCCTCCCAGAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTEST: gi|33406561|gb|CF212188.1|CF212188
genomic: CAAGAGACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCC--AGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATT
EST: TGTCTGCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTG GTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTACEST: gi|352776555|gb|FQ474857.1|FQ474857
genomic: TGTCTGCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
EST: AGAGATTCTCAAGAGACAGCTCTTTG GTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTACEST: gi|29783826|gb|CB350276.2|CB350276
genomic: AGAGAATCTCAAGAGACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
EST: GCAAGAGAATCTCAAGAGACAGCTCTTTG GTNTGCCTCCCAGGTTCCGTGATTCAGTGCGGGCTATAACCCCAGGATTACEST: gi|28965525|gb|CB344558.1|CB344558
genomic: GCAAGAGAATCTCAAGAGACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
EST: GCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTG GTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTACEST: gi|110732396|gb|EE107656.1|EE107656
genomic: GCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
EST: CTGCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTG GTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTACEST: gi|110376766|gb|EC941841.1|EC941841
genomic: CTGCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
EST: GACAGCTCTTTG GTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTACEST: gi|110725858|gb|EE102801.1|EE102801
genomic: GACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
EST: CAAGAGAATCTCAAGAGACAGCTCTTTG GTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTACEST: gi|22012251|gb|BQ797285.1|BQ797285
genomic: CAAGAGAATCTCAAGAGACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
EST: TGTCTGCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTG GTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
genomic: TGTCTGCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTGgtaagccccc ... tcatctccagGTTTGCCTCCCAGGTACCGTGATTCAGTGCGGGCTATAACCCCAGGATTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACCATCGGAGTCTCTCCCCAGAAATGAGACCGTTGGTGGATACATCTTTGTCTGCAACAACGATACTATGCAAGAGAATCTCAAGAGACAGCTCTTTGgtaagcccccgtctctgtttctctgattctatttaccatttttcagtgtccttctttggggtttgattctgattctgttttgcgttggtgggtatctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC