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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGGTCGTCGTTGACAACCTCGACAACTCCTCCGAAATCGCCATTCACCGCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccctcatgaaattttattttgcctcaattcgagctttgttgagtgtgttgcgtcaatttgaagtttttgagccttgggcgttagtgagtttgtt...

Basic information

species Vitis vinifera
transcript Vv02s0025g01580.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110731724|gb|EE106396.1|EE106396
EST:     GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG                         TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: gi|110697145|gb|EE073879.1|EE073879
EST:     GCGTTAAAGAACTCGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG                         TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: gi|161708830|gb|FC060896.1|FC060896
EST:     GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG                         TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: gi|110727068|gb|EE103430.1|EE103430
EST:     GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG                         TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: gi|110728721|gb|EE104535.1|EE104535
EST:     GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG                         TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: gi|110732185|gb|EE107249.1|EE107249
EST:     GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG                         TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: gi|71860637|gb|DT009692.1|DT009692
EST:     GCGTTAAAGAACTCGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG                         TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: gi|71883897|gb|DT032952.1|DT032952
EST:     GCGTTAAAGAACTCGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG                         TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: gi|110727091|gb|EE103475.1|EE103475
EST:     GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG                         TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: gi|30125545|gb|CB910884.1|CB910884
EST:     GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG                         TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: gi|110708350|gb|EE085791.1|EE085791
EST:     GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG                         TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: gi|71861707|gb|DT010762.1|DT010762
EST:     GCGTTAAAGAACTCGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG                         TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: gi|110709164|gb|EE084386.1|EE084386
EST:     GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG                         TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: gi|71856066|gb|DT005121.1|DT005121
EST:     GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG                         TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
EST: gi|30126470|gb|CB911809.1|CB911809
EST:     GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAG                         TTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA
genomic: GCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccct ... tcacatgcagTTGGATCTAAGGGACAAACAAGCGCTTGAACAACTTTTTGCCTCAACAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCGGTCGTCGTTGACAACCTCGACAACTCCTCCGAAATCGCCATTCACCGCGTTAAAGAACTGGCTGCTGAGTTCGGCGACAACCTCGTCTTCCACAAGgttcagccctcatgaaattttattttgcctcaattcgagctttgttgagtgtgttgcgtcaatttgaagtttttgagccttgggcgttagtgagtttgtt

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaaa