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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGAGAGATTGGCAACGGGCTCAGTCGATGGAACACTGGCCATCTTCGATTCAATCGACCCAGCTTCTTCATCCTTCACTTGCACCTCCAGATCTAGGgttcgtaagttctcttattcttttccttgattacgctctcaaaatttttgctgtagggtttttctttttgtttctatttttttggttgacttttatttgt...

Basic information

species Vitis vinifera
transcript Vv02s0025g01250.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71876339|gb|DT025394.1|DT025394
EST:     ATTCAATCGACCCAGCTTCTTCATCCTTCACTTGCACCTCCAGATCTAGG                         GTGCATGAGGATAGCGTAGTGAAAGTGGTTTGGGTCCCTCCGGAATATGGC
genomic: ATTCAATCGACCCAGCTTCTTCATCCTTCACTTGCACCTCCAGATCTAGGgttcgtaagt ... cttgttttagGTGCATGAGGATAGCGTAGTGAAAGTGGTTTGGGTCCCTCCGGAATATGGC
EST: gi|161709478|gb|FC059723.1|FC059723
EST:     ATTCAATCGACCCAGCTTCTTCATCCTTCACTTGCACCTCCAGATCTAGG                         GTGCATGAGGATAGCGTAGTGAAAGTGGTTTGGGTCCCTCCGGAATATGGC
genomic: ATTCAATCGACCCAGCTTCTTCATCCTTCACTTGCACCTCCAGATCTAGGgttcgtaagt ... cttgttttagGTGCATGAGGATAGCGTAGTGAAAGTGGTTTGGGTCCCTCCGGAATATGGC
EST: gi|71873900|gb|DT022955.1|DT022955
EST:     ATTCAATCGACCCAGCTTCTTCATCCTTCACTTGCACCTCCAGATCTAGG                         GTGCATGAGGATAGCGTAGTGAAAGTGGTTTGGGTCCCTCCGGAATATGGC
genomic: ATTCAATCGACCCAGCTTCTTCATCCTTCACTTGCACCTCCAGATCTAGGgttcgtaagt ... cttgttttagGTGCATGAGGATAGCGTAGTGAAAGTGGTTTGGGTCCCTCCGGAATATGGC
EST: gi|77578329|gb|DV217952.1|DV217952
EST:     ATTCAATCGACCCAGCTTCTTCATCCTTCACTTGCACCTCCAGATCTAGG                         GTGCATGAGGATAGCGTAGTGAAAGTGGTTTGGGTCCCTCCGGAATATGGC
genomic: ATTCAATCGACCCAGCTTCTTCATCCTTCACTTGCACCTCCAGATCTAGGgttcgtaagt ... cttgttttagGTGCATGAGGATAGCGTAGTGAAAGTGGTTTGGGTCCCTCCGGAATATGGC
EST: gi|161706013|gb|FC056710.1|FC056710
EST:     ATTCAATCGACCCAGCTTCTTCATCCTTCACTTGCACCTCCAGATCTAGG                         GTGCATGAGGATAGCGTAGTGAAAGTGGTTTGGGTCCCTCCGGAATATGGC
genomic: ATTCAATCGACCCAGCTTCTTCATCCTTCACTTGCACCTCCAGATCTAGGgttcgtaagt ... cttgttttagGTGCATGAGGATAGCGTAGTGAAAGTGGTTTGGGTCCCTCCGGAATATGGC