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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttggtgctaggaaattgcaagaaaatcagaggaaggaaaaaaaattaaaaa...

Basic information

species Vitis vinifera
transcript Vv02s0025g01000.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttggtgctaggaaattgcaagaaaatcagaggaaggaaaaaaaattaaaaa-------
||||||||| |||||| ||||||||||||||||||||||| | ||||||||||| || || ||||| ||||| |  || ||||| || |||||||| || || ||  |||| || |         |      | | | |  ||  |||    |     ||||    |  ||   || | |      ||     | |           
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcag--tacttacccctcccctcgcctcgcctctcccccgcgcgtcga--agcttcgggaagcctctcga---tccgcgcctccgaagcttttcacccgcccgatc

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G030167_T01 (Zea mays), 5'ss of exon 1
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttgg----tgctaggaaattg-caagaaaatcagaggaaggaaaaaaaattaaaaa
||| ||||| ||||| |||||||||||||||||||||||| | ||||||||||| || || || || ||||| || || ||||| || |||||||| || || ||  ||| |   |     ||     || |    ||| | | | | |   |    | ||||    ||| |     | ||  ||       |      | |   
GAATGACGCCGATGTATCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttaccctgcc-----tgccgcttcctcaccctcctagaagcttccagaagcttctagatgcttgtctctgtactctcagctgcccgatctggctgacgc

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G070360_T01 (Zea mays), 5'ss of exon 1
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttggtg----ctaggaaattgcaagaaaa-tcagaggaaggaaaaaaaattaaaaa
||| ||||| |||||  ||||||||||||||||||||||| | ||||||||||| || || || || ||||| || || ||||| || |||||||| || || ||  | |   | |     ||     || |    ||| | | | | |   |      ||||    ||||      | |   ||       |      |     
GAATGACGCCGATGTAGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttccttcgc-----tgccgcttcctcaccctcctagaagcttccagaagcccctagatggttgcctctgtactttcagctgcccgatgtggctggcgc

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G37160.1 (Glycine max), 5'ss of exon 1
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttggtgctaggaaattgcaagaaaatcagaggaaggaaaaaaaattaaaaa
|||||||||||||||||| ||||| ||||||||||||||| | ||||||||||| ||||| ||||||||||| || || |||||||| ||||||||||| ||     |  ||| |      | | ||| || |||  | |     || |    |   | | ||| | |           | |                  
GAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgt----ttcttcatttcgccatttcctc-ctctttcgtttcaaattcatgctcttaaacggaatcgtacttttccttctgcag-----------------

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G37150.1 (Glycine max), 5'ss of exon 1
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttggtgctaggaaattgcaagaaaatcagaggaaggaaaaaaaattaaaaa
|||||||||||||||||| ||||| |||||||||||||||   ||||||||||| ||||| ||||||||||| || || |||||||| ||||||||||| ||     |  ||| |  |   | |  ||||  |||||  |||  ||   |       | | | | |||           | |                  
GAACGACGCAGATGTCTCAAAGCAAATCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgt----ttcttcatttcaccattt--tctcccttttcgtttccaattcatgctctaaacggagtcgcacttttccttctgcag-----------------

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G02390.2 (Glycine max), 5'ss of exon 1
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttggtgctaggaaattgcaagaaaatcagaggaaggaaaaaaaattaaaaa
|||||||||||||||||| ||||| ||||||||||||||| | ||||||||||| ||||| ||||| || || || || ||||||||||| |||||||| ||    ||  ||| |  | |   | | |  ||||  |   |    ||||||       | |   | |       || |  |                   
GAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtt--tctcttcatttcattaccttcaccattttcccctctttcgtcgttttcaaactgaatcgtacttttccttctgcag-------------------

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G02420.1 (Glycine max), 5'ss of exon 1
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttggtgctaggaaattgcaagaaaatcagaggaaggaaaaaaaattaaaaa
|||||||||||| ||||| ||||| ||||||||||||||  | ||||||||||| ||||| |||||||| || ||||| |||||||| ||||||||||| ||    ||  ||| |  |   | | ||| || |||  ||| |   || |    |   |   | | | |           | |                  
GAACGACGCAGACGTCTCAAAGCAAATCCAGCAGATGGTTCGGTTCATCCGCCAGGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAGgtt--tctcttcatttcaccattttctc-ctctttcgtctcccattcatgctctaaaactgattcgtacttttccttctgcag-----------------

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT4G11150.1 (Arabidopsis thaliana), 5'ss of exon 1
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttggtgctagga---aattgcaagaaaatcagaggaaggaaaaaaaattaaaaa----------------
|||||||| |||||| || | |||||||||||||||||||||||| ||||||||||||||||| || || || || || ||||| || || || |||||||||    |  ||  |    | | |  |  | ||| ||   ||  ||  | ||   ||   |   ||| | |||    | |   ||  |  |   | ||                     
GAACGACGGAGATGTATCGAGGCAGATCCAGCAGATGGTGAGATTTATCCGCCAAGAAGCGGAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAAgta----tgatctttagtgtttctgtttccatttatcagatcttatgatatgaatctctaattcaatcgtaagcggtttatctgattgttatcgatttggtttatttgaataatcgtag

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G64200.1 (Arabidopsis thaliana), 5'ss of exon 1
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttt-------tctcttcggat-cgtttggtgctaggaaattgcaagaaaatcagaggaaggaaaaaaaattaaaaa
||||||||| ||||  ||||  ||||||||||||||||| || || |||||||| ||||| || |||||||| || || |||||  | ||| | ||||||||||| | |  || |   |  |  ||||||||||        ||| | || || |||       | |  ||||||  ||  ||    |   |         || ||| 
GAACGACGCCGATGCTTCCATCCAGATCCAGCAGATGGTTAGGTTTATCCGCCAGGAAGCCGAAGAAAAGGCTAACGAGATCTCCATCTCCTCTGAAGAAgtaagtccatacatt---acatccactctcttttgatctcgatctttacgaatacgtgactctgttgacaattgcgtgactattttggtttgttctt----ttgaaa-

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S269_15V6.1 (Physcomitrella patens), 5'ss of exon 1
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttggtgctaggaaattgcaagaaaatcagaggaa--ggaaaaaaaattaaaaa--
|||||||   || || ||  ||||  ||||||||||||||   ||||| ||||| ||||||||||| ||||| ||||| ||||||||||| ||||| || ||||| | | |||  |   | || |  | |      |  ||   |  ||||  |  ||||  | |  |      |  ||| |   |||     |||  |     
GAACGACATGGAGGTTTCGCAGCAAGTCCAGCAGATGGTGCAGTTCATACGCCAGGAAGCGGAGGAGAAGGCCAATGAGATCTCTGTATCTGCCGAGGAGgtaagacca-tcaggctcct-tgaatccaccgggcacgtttgcaaatgttt--ttataggggagtttatctgttttggagaattcggacctcgaatcgacgttg

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S68_127V6.1 (Physcomitrella patens), 5'ss of exon 1
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttg--gtgctaggaaattgcaagaaaatcagaggaaggaaaaaaaattaaaaa----
|||||||   || || || |||||| ||||||||||||||   ||||||||||| ||||| ||||| ||||| || || ||||||||||| || ||||| || |   |  | ||   |||||   | ||  |  ||     ||  ||  |||  | | |     ||||  |  ||     | |  |    ||||||   | |    
GAACGACATTGAGGTTTCGAAGCAGGTCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCAGAGGAGAAGGCCAACGAGATCTCTGTATCTGCTGAAGAGgtgaagttctttac---aatgt---cccttgtggtttcaggcgattctgttgaggggtttctctattgtgaagaatctgaatgtcgagttaaaaatcttataggtt

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ17636 (Selaginella moellendorffii), 5'ss of exon 1
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttggtgctaggaaattgcaagaaaatcagaggaaggaaaaaaaattaaaaa-----
|||||| || || ||| |||||||| ||  |||||||||||||||||||||||| ||||| ||||| || || || || ||||| || ||||| ||||| |||||  |     |||            ||||| |   ||| | ||   ||| |    |||             ||    |  |||    | |||  |       
GAACGATGCCGAGGTCGCCAAGCAGGTCGCGCAGATGGTGAGATTCATCCGCCAGGAAGCCGAGGAGAAAGCCAACGAGATCTCGGTCTCCGCAGAAGAGgtaaggttttcttctc-----ctcctcttctttgtagacttggaataaattgatagatggatggatgggttctttccttcggtggagctgacattggatttccag

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ29103 (Selaginella moellendorffii), 5'ss of exon 1
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttggtgctaggaaattgcaagaaaatcagaggaaggaaaaaaaattaaaaa-----
|||||| || || ||| |||||||| ||  |||||||||||||||||||||||| ||||| ||||| || || || || ||||| || ||||| ||||| |||||  |     |||            ||||| |   ||| | ||   ||| |    |||             ||       |||    | |||  |       
GAACGATGCCGAGGTCGCCAAGCAGGTCGCGCAGATGGTGAGATTCATCCGCCAGGAAGCCGAGGAGAAAGCCAACGAGATCTCGGTCTCCGCGGAAGAGgtaaggttttcttctc-----ctcctcttctttgtagacttagaataaattgatagatggatggatgggttctttccttctgtggagctgacattggatttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724154|gb|EE099733.1|EE099733
EST:     GCCAAGAAGCGGAGGAAAAGGCGAACGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|32247497|gb|CD713316.1|CD713316
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|30305484|gb|CB982278.1|CB982278
EST:     CTCTGTATCCGCCGAAGAA                         GAA-TCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: CTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|34548173|gb|CF516405.1|CF516405
EST:     GCCAAGAAGCGGAGG-AAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|71871411|gb|DT020466.1|DT020466
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|110716107|gb|EE090797.1|EE090797
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|110368471|gb|EC932450.1|EC932450
EST:     GCCAAGAAGCGGAGGAAAGGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAA-TCAAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGAT
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTC-AACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGAT
EST: gi|110372656|gb|EC936840.1|EC936840
EST:     CCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: CCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|71856952|gb|DT006007.1|DT006007
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|37184964|gb|CF604317.1|CF604317
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|110401740|gb|EC968358.1|EC968358
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|30127506|gb|CB912845.1|CB912845
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCTGAAGAA                         GAATTCAATATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|32272492|gb|CD721651.1|CD721651
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|110422908|gb|EC989242.1|EC989242
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCTGAAGAA                         GAATTCAATATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|110356758|gb|EC919820.1|EC919820
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|30304816|gb|CB981610.1|CB981610
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|110692843|gb|EE068555.1|EE068555
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|110428443|gb|EC994915.1|EC994915
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCTGAAGAA                         GAATTCAATATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|110403040|gb|EC964106.1|EC964106
EST:     GTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|110707645|gb|EE084278.1|EE084278
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|71868568|gb|DT017623.1|DT017623
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|71859650|gb|DT008705.1|DT008705
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|110388165|gb|EC952885.1|EC952885
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|110386435|gb|EC951029.1|EC951029
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|110709820|gb|EE085616.1|EE085616
EST:     GCCAAGAAGCGGAGGAAAAGGCGAACGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|110732725|gb|EE108265.1|EE108265
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|30323619|gb|CD006881.1|CD006881
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|110699974|gb|EE077482.1|EE077482
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|110373529|gb|EC937773.1|EC937773
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|161707251|gb|FC056416.1|FC056416
EST:     GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
EST: gi|110369246|gb|EC933400.1|EC933400
EST:     GCCAAGAAGCGGAGAAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAA                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC
genomic: GCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctac ... gtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttggtgctaggaaattgcaagaaaatcagaggaaggaaaaaaaattaaaaa

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa